Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 seq17 105 1e-17 >seq1 Length=48367220 Score = 125 bits (138), Expect = 1e-23 Identities = 348/526 (66%), Gaps = 16/526 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||||||||| || || ||| ||||| | ||| | |||||| Sbjct 31903576 CTTGCCTTCTTCGCCGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGGCGTTTCATG 31903517 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || || || |||||||| ||| |||||||| |||||||| || || ||||| Sbjct 31903516 AAAGAAGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGGTTCCAGATCGCGATTGAGAA 31903458 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || | | || |||||| |||| | ||| Sbjct 31903457 TATCCACTCAGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACTGAGAA 31903398 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | ||||| | ||||| |||||| |||| || | ||||||||||| ||||| Sbjct 31903397 GAACCGCCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAGTGGGC 31903338 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGC-AACGTTCGGC-GAGAGGCTGGTAGCCTTTACC 42719 | |||||||| | || || | ||| || |||||| | | || ||| | Sbjct 31903337 TTTACGGTGGATCGA-----CGGAGGCGAGAGTTTTGCGGAGAGGTTAATTGCTTTTGCT 31903283 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||| || || || || |||||||| || | || || ||| | || | || Sbjct 31903282 TGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAA--AAAAC 31903225 Query 42780 GT--GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || | ||||| || || |||||||||||||| | ||| | || || ||||| | Sbjct 31903224 GTGGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTC 31903165 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 || | || || || || ||||| | | |||| | ||| | |||| |||||| Sbjct 31903164 ATTGTGATTTCGCGTGTCTCCTTTAC---AGCCTGTTGAGGAAGAAGCTGAGTGAGGAGC 31903108 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | || || || | | ||| || ||||| || |||| |||||| Sbjct 31903107 GCGTGAAGGGGATAGTGAAGGAAGCTGTGGATATAGAGAGGGAGTT 31903062 >seq17 Length=14661173 Score = 105 bits (116), Expect = 1e-17 Identities = 415/646 (64%), Gaps = 10/646 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || |||| ||||| || |||||| | || || Sbjct 8256134 ATCTGGGAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTC 8256193 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 | ||| | | ||| |||||| ||| || |||| ||| ||| || | Sbjct 8256194 TCGTCGGATATCCGCCA-CTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCA 8256252 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | || |||||||||||||||||||| || || ||| || || || ||| | || Sbjct 8256253 TGTCCTTGCCTTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTT 8256312 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAG 42537 |||||||||||| || || |||||||| ||| || ||||| |||||||| || || | Sbjct 8256313 CATGAAAGAGGTCCAAGTCTCGGAGGCGCG-TGCTTTTTACGGATTCCAGATCGCGATTG 8256371 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 |||| | ||||| ||| ||||| ||| | | || || ||| |||| | | | Sbjct 8256372 AGAATATCCACTCAGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGG 8256431 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || || | ||||| | || || || ||| |||| || | |||||||| | Sbjct 8256432 AGAAGAATCGTCTGTTTCATGCTATCGAAACGGTGCCGTGTGTGGCTAAGAAGGCACGGT 8256491 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| || | ||| | |||| |||||||| || || ||| Sbjct 8256492 GGGCCTTGCGGTGGATTGACGGGAGCGA---GAGTTTCGCGGAGAGGCTAGTTGCTTTTG 8256548 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | ||| || || || || |||||||| || | || || ||| | || || Sbjct 8256549 CTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGC 8256608 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | || |||||| || | ||||| || ||||| | ||| | || || ||||| | Sbjct 8256609 GTGGGTTGATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCGCGAGATGAAGGGCTTC 8256668 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 || | || || || ||||| | ||| ||| || ||| | |||| |||||| Sbjct 8256669 ATTGTGATTTCGCGTGCCTTC---TCTACAGCTTGCTGAGGAAGAAGCTGAGTGAGGAGC 8256725 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || || || | | ||| || ||||| || |||| |||||| Sbjct 8256726 AAGTGAAGGGGATAGTGAAGGATGCAGTGGATATTGAGAGGGAGTT 8256771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309524140640