Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq11 91.5 1e-13 seq5 82.4 6e-11 >seq6 Length=26894541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| ||||| |||||||| || || |||||| |||||||| |||||||| Sbjct 10380876 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCTGC- 10380818 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || ||||| ||||| || ||||| || || | |||||||||| || Sbjct 10380817 AAGAGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGG 10380758 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||||| ||| || |||| | | | |||||| ||| Sbjct 10380757 AATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAAC 10380698 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| ||||| ||||| |||| || || || ||||||||||| Sbjct 10380697 CTCAAGCGTGATTGTATTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq11 Length=18885544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || || || || ||||| || ||||||||||||||||| |||||||| || Sbjct 145361 ACCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGC 145302 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||| | || || | ||||| || || ||||| || ||||| |||||| Sbjct 145301 CAAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAATATTAGACGCTGTTGATCC 145247 >seq5 Length=25802683 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| |||| | |||| ||||| || ||||||||||||||| ||||| | | Sbjct 7051117 CCTCCTCTGAGCCTTAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAG-C 7051175 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| || | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 7051176 AAGTGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGATC 7051229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050234256228