Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq2 91.5 2e-13 >seq1 Length=48367220 Score = 114 bits (126), Expect = 2e-20 Identities = 375/571 (66%), Gaps = 25/571 (4%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 125816 || || || || | |||||||||||| ||||||||||| | |||| ||||| ||||| Sbjct 31902864 TACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAG--GATATCAACTCCA 31902921 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGT------TGGCAC-CCCAATCTGTTTG 125869 | |||||||||| || || ||| ||||| | | | ||||| | Sbjct 31902922 TCCAATCAAATGGATT-----AG--CCACATTGTACACCTTCCCGCACCCAAGCGCACCC 31902974 Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 | || | ||| | || ||||||| |||| | |||| ||| ||||| || | Sbjct 31902975 AACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCCACC 31903034 Query 125930 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | ||||| |||| ||||| | ||| || |||| || ||||| |||||| ||| Sbjct 31903035 AACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTCACT 31903094 Query 125990 ATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCACGG 126047 || | | | | ||| | | ||| | | || | ||| || || || | |||| Sbjct 31903095 ATCCCCTTCACGCGCTCCTCACTCAGCT-TCTTCCTCAACAGGCTGTAAAGGAGACACGC 31903153 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 ||| || || || || || || || ||||| | || ||||||||| ||| |||| Sbjct 31903154 GAAA-TCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTG 31903212 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 |||| || || || || || ||||| || ||||||||||| |||||||| || || | Sbjct 31903213 GCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCC 31903272 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACC 126227 | ||||| || || || |||| | | ||| ||||| | || | | ||| | || Sbjct 31903273 CTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAA-ACTCTCGCC--TCCGTCGATCC 31903329 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 126287 || | ||||||| |||||| || | | |||||| || |||| || || | ||| | Sbjct 31903330 ACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACA 31903389 Query 126288 GTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | ||||| || | | ||| |||||||| Sbjct 31903390 GGCGGTTCTTCTCAGTAGAATCCTTGATGTA 31903420 >seq2 Length=23562801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 246/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 19331146 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 19331087 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | ||||| |||||| || | ||||| |||||||| || |||| || || || | Sbjct 19331086 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 19331027 Query 10909 GGTTTGTTCGCGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 10965 ||| || || | ||||||||| | | | || | ||| | || |||| | || || Sbjct 19331026 GGTCTGCTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 19330970 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAG 11023 ||| ||||||||||| | || || || || || ||| || ||| |||| ||| Sbjct 19330969 GGCATCAATTTCATCCACAAACACAATGCAAGGAGCATTCTCTTTGGC--CTTCTTGAAG 19330912 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 | ||| ||||||| |||||| ||||| |||||||| || ||||| | | | ||| Sbjct 19330911 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 19330852 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 19330851 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 19330793 Query 11143 CGTCCCAGG 11151 || || || Sbjct 19330792 AGTACCTGG 19330784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334828163120