Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq1 102 8e-17 seq7 98.7 1e-15 seq17 96.9 3e-15 seq14 96.9 3e-15 seq2 93.3 4e-14 seq12 91.5 1e-13 seq6 91.5 1e-13 seq11 89.7 5e-13 seq4 89.7 5e-13 >seq15 Length=15134944 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||||||||| ||||| || | Sbjct 12612286 GACTCCTTCTGGATGTTGTAGTCAGCAAGTGTACGGCCGTCCTCGAGCTGTTTTCCAGCG 12612345 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || ||||||||||| ||||| || |||||||| ||||| ||| | || | ||| Sbjct 12612346 AAAATGAGACGCTGTTGATCCGGTGGGATACCTTCCTTGTC-TTGAATCTTGGCTTTGAC 12612404 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || || ||||| | ||||| ||||||| || | || || || |||| |||| Sbjct 12612405 ATTG-TCAACAGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTTGCCCGTCAAGGTTT 12612463 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 12612464 TCACGAAGATCTGCAT 12612479 >seq1 Length=48367220 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | || || |||| | | |||||||| || ||||| |||||| Sbjct 25980329 GCCACCTCGAAGTCGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 25980388 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| ||||| || || | | |||| || | ||| ||||| ||||| Sbjct 25980389 AAGGGTGCGACCGTCCTCAAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGG 25980448 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| || || | |||| || | ||||| | ||||| Sbjct 25980449 GATACCTTCTTTATCTTGGATCTTGGCCTTGACATTG-TCAATTGTGTCCGAGCTCTCCA 25980507 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | || || ||||| ||||| |||||||| ||||||||| Sbjct 25980508 CTTCCAAGGTAATTGTCTTGCCAGTGAGAGTCTTTACAAAGATCTGCATG 25980557 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| || || | || || || | | | || ||||| |||||||||||||| Sbjct 25979874 CCGCCTCTCAGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCA 25979933 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||| | | | || || | |||||||| || || Sbjct 25979934 AGGGTCCGTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTTTGTTGGTCTGGTGGG 25979993 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || |||||| || | |||| || | |||||| | ||| || Sbjct 25979994 ATTCCTTCCTTATCCTGGATTTTAGCCTTGACATTG-TCAATGGTGTCAGAGCTCTCGAC 25980052 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || ||||||| ||| ||||||||||| ||||| Sbjct 25980053 CTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTTACAAAAATTTGCAT 25980100 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| | ||||| || || |||||||| |||| Sbjct 4826423 GATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCATCTTCTAGTTGTTTTCCGGCG 4826482 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || ||||| || ||||| || || || ||||| ||||| |||||| ||| | | Sbjct 4826483 AAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACA 4826542 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || || | || || ||||||| || | || || || |||| || || Sbjct 4826543 TTG-TCGATTGTATCTGAAGATTCGACCTCGAGGGTTATGGTCTTCCCCGTCAAGGTCTT 4826601 Query 138600 TACAAAAATCTGCATGGCTTATAATATTATTCCGTTCCTCT 138640 || || ||||||||| ||| | | || || | ||||||| Sbjct 4826602 CACGAAGATCTGCATGTCTTCTGGT-TTCTTGCTTTCCTCT 4826641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || |||||||||||||| ||||| ||| | ||| || || || ||||| || || | Sbjct 25980135 GATTCCTTTTGAATGTTATAGTCAGCT-AGAGTGCGTCCATCTTCCAGTTGCTTGCCAGC 25980193 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || | ||||||||| || || || || || ||||| |||||| ||| | Sbjct 25980194 AAAGATGAGCCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTCAC 25980253 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | ||| ||||| | || | || || ||||||| ||| || Sbjct 25980254 GTTATCAATAGTGTCAGAGCTCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTT 25980313 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 25980314 AACAAAGATCTGCATG 25980329 >seq7 Length=15101417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||| || || || | | |||||||| || ||||||||||| | Sbjct 1458438 CCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1458497 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||||| || || || || | | |||| || | |||||| || || || Sbjct 1458498 AGAGTGCGCCCATCCTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGG 1458557 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||||||| || | | || | |||||| | ||| ||| Sbjct 1458558 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACC 1458617 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || ||||||||||| Sbjct 1458618 TCCAAGGTAATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 1458664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | |||||||| ||||||||||| || | ||| ||| ||||| Sbjct 1458227 AACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCATCCTC 1458286 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| || || | | |||| || | ||||||||| ||||| || || || || || Sbjct 1458287 AAGTTGCTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCTTG 1458346 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| || | | || | |||||| | ||||||||| | || | || || Sbjct 1458347 GATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTT 1458406 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| |||||||| Sbjct 1458407 CCCGGTGAGTGTCTTGACAAAGATCTGCAT 1458436 >seq17 Length=14661173 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| ||| | |||||| |||||||| || || || | Sbjct 4943084 GATTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGTCCATCCTCGAGCTGCTTGCCAGC 4943142 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || | ||||||||| ||||| || || || || || |||||| || | Sbjct 4943143 AAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGAC 4943202 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| ||||||||| | || | || || ||||||| ||| || Sbjct 4943203 ATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTT 4943262 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4943263 GACAAAGATCTGCAT 4943277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| ||||| || || | | Sbjct 4943312 GACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCA 4943371 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | | || || || || || || ||||| ||||| ||| || ||||| | Sbjct 4943372 AAGATCAACCTTTGCTGATCTGGGGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACA 4943431 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||| | |||||||||| || | || || ||||| |||||||| Sbjct 4943432 TTGT-CGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTTTT 4943490 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 4943491 CACAAAAATCTGCAT 4943505 >seq14 Length=17716633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||||||||| || | Sbjct 8228939 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGTTGTTTCCCAGCG 8228998 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || |||||||||||||| ||||| || || || ||||| ||| | || | ||| Sbjct 8228999 AAAATGAGACGCTGTTGGTCTGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGCTTTGAC 8229057 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||||| || | || || || |||| || | Sbjct 8229058 ATTG-TCGATTGTGTCTGATGACTCAACCTCGAGGGTTATGGTCTTTCCCGTCAAGGTCT 8229116 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 8229117 TCACGAAGATCTGCAT 8229132 >seq2 Length=23562801 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| || | ||| || || | | |||||||| || ||||||||||| Sbjct 14982821 CCACCCCTCAACCGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 14982880 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| ||||| || | | || |||||||||||||| || || Sbjct 14982881 AGCGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGG 14982940 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | ||| |||| || | ||||| | ||||| | Sbjct 14982941 ATGCCCTCCTTGTC-TTGAATCTTGGCTTTGACATTG-TCGATCGTGTCTGAGGACTCAA 14982998 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || ||||| |||| ||||| || || |||||||| Sbjct 14982999 CCTCGAGGGTTATTGTCTTACCCGTCAAGGTTTTCACGAAGATCTGCAT 14983047 >seq12 Length=14929429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| ||||| || | Sbjct 11925770 GACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCGTCCTCGAGCTGTTTTCCAGCG 11925829 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || |||||||||||||| || || |||||||| ||||| ||| | || | ||| Sbjct 11925830 AAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTC-TTGAATCTTGGCTTTGAC 11925888 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | || || | || || ||||||| || | || || || |||| |||| Sbjct 11925889 ATTG-TCGATTGTATCTGAGGATTCTACCTCGAGGGTTATTGTCTTGCCCGTCAAGGTTT 11925947 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 11925948 TCACGAAGATCTGCAT 11925963 >seq6 Length=26894541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| ||| | ||||| ||||||||||||||| || | Sbjct 10380387 GATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCG 10380328 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || || || || || ||||| |||||||||||||| |||||| ||| | Sbjct 10380327 AAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTGTCTTGGATTTTGACTTTGACG 10380268 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||| || || | || | ||||| || ||||| ||||| Sbjct 10380267 TTGTCGATTGTATCAGAATTCTCGACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTC 10380208 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 10380207 ACGAAGATCTGCATG 10380193 >seq11 Length=18885544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||| ||||| ||| || ||| || || ||||| || || || | | Sbjct 145325 CTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAA 145266 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 |||||||||||||| ||||| || || ||||| ||||| ||| | || | || | | Sbjct 145265 TATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTC-TTGAATCTTGGCCTTGACGT 145207 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| | ||||||||| | || | || || || || || ||||| Sbjct 145206 TG-TCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTC 145148 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 145147 ACGAAGATCTGCATG 145133 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | |||||| || | || | | | ||||| || || || || || || Sbjct 1306626 AGCCACCACGGAGACGCAAGACAAGGTGAAGGGTCGACTCTTTCTGGATATTATAATCCG 1306685 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || || | ||||| | || || |||| | |||| ||||||||||| ||||| | Sbjct 1306686 CCAAGGTTCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCGGTG 1306745 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || || || ||||| ||||||| || | | || | ||||||| | ||||| Sbjct 1306746 GGATTCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCA 1306805 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || || |||| || || |||||||||||||| Sbjct 1306806 CCTCCAGTGTAATCGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 1306854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246804954080