Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7 107 1e-18 seq11 104 2e-17 seq4 102 6e-17 seq1 98.7 7e-16 seq6 96.9 2e-15 seq17 95.1 9e-15 seq12 91.5 1e-13 seq15 82.4 5e-11 >seq7 Length=15101417 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | || ||| || || || || || || ||||| ||||| ||||| Sbjct 1458894 CCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 1458953 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||||||||||| | ||||| | ||| || || || Sbjct 1458954 AGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 1459013 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| ||| ||| | || |||||||| |||| || Sbjct 1459014 ATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCCACC 1459073 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || |||||||| |||||||||||||| Sbjct 1459074 TCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 1459120 >seq11 Length=18885544 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 ||||||||| || || || || || || ||||| ||| ||| | | | || || | || Sbjct 145565 ATGAAGGGTCGACTCCTTCTGAATATTATAATCAGCT-AGAGTCCGACCATCCTCAAGTT 145507 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| |||||| | |||||||| |||||||| ||| |||||||||||||| ||||| Sbjct 145506 GTTTCCCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTT 145447 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | || || | || || || ||||| | || || || | |||||||| || || | Sbjct 145446 TTGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTAATGGTCTTCCCGG 145387 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || || || |||||| Sbjct 145386 TCAAGGTCTTGACGAATATCTGCATA 145361 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| || || | || | ||||| Sbjct 16430448 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTCCTTCCATCTTCA 16430389 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| ||||| | ||||| | ||| ||||| ||| || || |||||||| | Sbjct 16430388 AGCTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGA 16430329 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || ||||| || | || || || ||||||||||| || Sbjct 16430328 ATTTTGGCCTTCACATTATCGATAGTGTCAGAGCTCTCCACCTCCAAGGTAATGGTCTTC 16430269 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| || || ||||| ||||| Sbjct 16430268 CCAGTTAAAGTCTTCACGAAAATCTGCAT 16430240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | || || || ||||| || || || || ||||||||||| Sbjct 16429784 TGCCACCTCTCAAACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 16429725 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | || ||||| ||| | |||| | ||| ||||| || Sbjct 16429724 CAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCTGGTG 16429665 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || ||| | || ||||| || |||| | Sbjct 16429664 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAGCTTTCCA 16429605 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || ||||| || || || |||||||| Sbjct 16429604 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCAT 16429556 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || ||||||||| | | ||| | ||||| | || Sbjct 145337 ATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTG 145278 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| |||| | ||||||||| || ||| || ||||||||||| ||| || Sbjct 145277 CTTTCCAGCGAATATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTT 145218 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || ||||| | || || || | || ||||| || || || Sbjct 145217 GGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGT 145158 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 145157 GAGGGTTTTCACGAAGATCTGCATGTTT 145130 >seq4 Length=23188140 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| |||||||| || ||||| || ||| | | | ||||| | || Sbjct 1306880 TGAAGGGTAGACTCTTTTTGGATATTGTAGTCAGCCAGAGTCCGGCCATCTTCGAGCTGC 1306939 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| || ||||| || ||| || || |||||||| ||| ||| Sbjct 1306940 TTTCCGGCAAAGATCAAGCGTTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGAATCTTG 1306999 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||||| | ||||| |||| |||||||| || |||||| Sbjct 1307000 GCCTTGACGTTGTCGATGGTGTCGCTGCTCTCTACCTCTAGAGTAATGGTCTTCCCTGTC 1307059 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || |||||||| |||||| Sbjct 1307060 AAGGTCTTCACAAAAATCTGCATA 1307083 >seq1 Length=48367220 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||||| | || |||||||||||||| || || || |||||||| ||| Sbjct 44860133 TGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 44860074 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | || |||||||| | || | | ||| ||||| || Sbjct 44860073 CAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTG 44860014 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| || ||| |||||| | || ||||| || |||| | Sbjct 44860013 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCA 44859954 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || ||||| || || || |||||||| Sbjct 44859953 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 44859905 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| || ||| | ||| | ||||| Sbjct 44860797 ACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTCCCATCTTCA 44860738 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 44860737 AGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 44860678 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || ||||| | || || || ||||| ||||| || Sbjct 44860677 ATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAAGGTGATGGTCTTT 44860618 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || ||||| || |||||| Sbjct 44860617 CCTGTGAGGGTCTTCACAAAGATCTGCATA 44860588 >seq6 Length=26894541 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || ||||| |||||||||||| || | | |||| || | |||| Sbjct 10380396 TGGAGTGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGT 10380337 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| || || || || || || ||||| ||||| |||||| Sbjct 10380336 TTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTGTCTTGGATTTTG 10380277 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || ||||| ||| || || || | || |||||||| |||||| Sbjct 10380276 ACTTTGACGTTGTCGATTGTATCAGAATTCTCGACTTCAAGAGTTATGGTTTTGCCTGTC 10380217 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 10380216 AGGGTTTTCACGAAGATCTGCAT 10380194 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| || || ||||| || | || | || ||||||||| Sbjct 10380624 TGAAGGGTGGACTCCTTTTGGATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGT 10380565 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | | |||||| || || || ||||| ||||| ||| ||| Sbjct 10380564 TTCCCAGCAAAAATTAGCCTCTGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTG 10380505 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||| | || ||||||||| | | || || || | || |||||||| || || Sbjct 10380504 GCCTTTACGTTGTCAATAGTATCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTT 10380445 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || ||||||||| Sbjct 10380444 AGGGTTTTGACGAAGATTTGCATA 10380421 >seq17 Length=14661173 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || ||||||||||| |||| | | | | || || Sbjct 4942841 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGCCCATCCTCA 4942900 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| |||||||| | || | | ||||||||| || || || || || || Sbjct 4942901 AGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCTTGG 4942960 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| | || || || ||| | || || || ||||| ||||| || Sbjct 4942961 ATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTC 4943020 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || ||||||||||||||| Sbjct 4943021 CCAGTCAAAGTCTTCACAAAAATTTGCATA 4943050 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || | || || || ||||| || || || || |||||||| || | Sbjct 4943279 CCACCTCTAAGTCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 4943338 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || |||| ||| || ||||| | ||||| | || || || ||| Sbjct 4943339 AGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGGGGA 4943398 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || ||||||| | || || || || |||| || Sbjct 4943399 ATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATTGTGTCAGAGCTTTCCACC 4943458 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || |||||||| |||||||| ||||| Sbjct 4943459 TCGAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATCTGCAT 4943505 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || |||||||||||||| || | || | ||||| | || Sbjct 4942391 TGTAGAGTGGACTCCTTCTGTATGTTGTAATCTGCCAGGGTCCTTCCATCTTCAAGCTGC 4942450 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| |||||| || |||||||| ||||| Sbjct 4942451 TTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGATTTTA 4942510 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || | | || || || | ||| |||||||| || ||| Sbjct 4942511 GCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCAGTC 4942570 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 4942571 AGGGTCTTGACAAAGATTTGCAT 4942593 >seq12 Length=14929429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| | | || || || || || || || || || |||||||| || | Sbjct 11925737 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 11925796 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | ||||| |||||| | || | |||||||||||| ||| Sbjct 11925797 AGTGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGG 11925856 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| ||| ||| ||| | || || ||||| |||||| Sbjct 11925857 ATACCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCGATTGTATCTGAGGATTCTACC 11925916 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| || || || || |||| ||||| || || || ||||| || Sbjct 11925917 TCGAGGGTTATTGTCTTGCCCGTCAAGGTTTTCACGAAGATCTGCATCTT 11925966 >seq15 Length=15134944 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || || ||||| | |||| | ||| || || ||||| ||||||||| Sbjct 555871 TCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTG 555930 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| | || |||||||| ||| ||| || || | || ||| Sbjct 555931 TCCTGGATTTTGGCTTTGACATTGTCAATAGTATCACTAGATTCGACCTCAAGAGTGATG 555990 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| ||||| || ||||| Sbjct 555991 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 556025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357381049732490