Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq11 125 6e-24 seq17 96.9 3e-15 seq4 89.7 5e-13 >seq6 Length=26894541 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||| | || || || || || || |||||||||||||||||||| Sbjct 10380651 ATCCCACCGCGAAGCCTGAGGACAAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCC 10380592 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || |||||||| || || | || | | || || ||||| Sbjct 10380591 GCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTCTGTTGATCCGGA 10380532 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| |||||||| || || | || | || | || |||||| ||| Sbjct 10380531 GGGATACCTTCTTTGTCTTGAATCTTGGCCTTTA-CGTTGTCAATAGTATCGGAACTCTC 10380473 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | |||||||||||||| ||||| || || |||||||| Sbjct 10380472 GACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGCAT 10380422 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||||| || || || || || |||||||||||||| || |||||| Sbjct 10380423 ATACCGCCGCGAAGCCTCAGAACAAGGTGGAGTGTGGATTCCTTTTGGATGTTGTAATCG 10380364 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||| || ||| | |||| |||||||| || || Sbjct 10380363 GCAAGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGA 10380304 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| ||||| ||||| ||||| || | || | || || ||| ||| Sbjct 10380303 GGGATACCTTCTTTGTCTTGGATTTTGACTTTGA-CGTTGTCGATTGTATCAGAATTCTC 10380245 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | |||||||| || || ||||| || || || ||||| Sbjct 10380244 GACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 10380194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| || ||||| ||||| | || | ||| || Sbjct 10381087 CACGAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCCTC 10381028 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || |||| | | ||||||||||| ||||| ||||| ||||| || Sbjct 10381027 TAATTGCTTCCCAGCAAATATAAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTATCCTG 10380968 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || ||| | || | |||| || || || ||| ||||| ||||| | || | Sbjct 10380967 AATCTTGGCTTTCA-CGTTGTCTATCGTATCAGAGCTCTCAACTTCAAGAGTGATGGTCT 10380909 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 | || || ||||| || ||||| || |||||| ||| Sbjct 10380908 TCCCTGTGAGAGTCTTGACAAAGATCTGCATCCCGC 10380873 >seq11 Length=18885544 Score = 125 bits (138), Expect = 6e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| |||||||| | ||| ||||| || || || ||||| || ||||||||||| Sbjct 145591 ATCCCTCCACGGAGCCTGAGCACAAGATGAAGGGTCGACTCCTTCTGAATATTATAATCA 145532 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || | ||| || | |||||| || ||| | ||||| ||||| ||||| || Sbjct 145531 GCT-AGAGTCCGACCATCCTCAAGTTGTTTCCCAGCGAAGATCAAACGTTGTTGGTCTGG 145473 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || || ||||| || |||||||| ||||| | | || | || | ||||||| || Sbjct 145472 TGGGATTCCTTCCTTGTCTTGAAT-TTTTGCCTTAACGTTGTCGATGGTGTCGCTGCTCT 145414 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| |||||||||| || || ||||| | || || || || || ||||| Sbjct 145413 CGACCTCGAGAGTAATGGTCTTCCCGGTCAAGGTCTTGACGAATATCTGCAT 145362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || || || || || || || || || |||||||||||||| Sbjct 145819 ATGCCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCA 145760 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | |||| | |||||||||||| Sbjct 145759 GCCAAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGT 145700 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || |||| || | || | ||||||| ||| Sbjct 145699 GGGATCCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTC 145641 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || |||| || || |||||||| || || |||||||| |||||| Sbjct 145640 CACCTCCAGCGTAATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCATC 145589 >seq17 Length=14661173 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | |||||| || |||||||| || |||||||| || Sbjct 1747438 ATCCCACCGCGCAGACGGAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCA 1747379 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | |||||||| || | ||||| | |||||||||||| Sbjct 1747378 GCAAGGGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGT 1747319 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || ||| || | || | ||||| ||| ||| Sbjct 1747318 GGGATCCCTTCCTTGTCCTGGATCTTTGTCTTCACATTGTCAATTGTGTCAGAACTCTCA 1747259 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| | || ||||| || ||||| || ||||| || |||||| Sbjct 1747258 ACCTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATC 1747208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| || ||||| || || ||||| || || | ||| | ||| || Sbjct 1747874 CACCAAATGCAGAGTCGATTCTTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTC 1747815 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||||| || | ||||| | |||||||||||| || || ||||| |||||||| Sbjct 1747814 CAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 1747755 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| |||| || | || | || || || ||| || || | || | |||| Sbjct 1747754 GATCTTTGTCTTGA-CGTTATCAATAGTATCCGAGCTCTCCACCTCCAAGGTGATAGTTT 1747696 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| |||||||| |||||| Sbjct 1747695 TTCCAGTGAGGGTTTTCACAAAAATCTGCATC 1747664 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||| || || || || || || || || |||||||||||||| Sbjct 1306628 CCACCACGGAGACGCAAGACAAGGTGAAGGGTCGACTCTTTCTGGATATTATAATCCGCC 1306687 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | ||| ||||| || || || || | |||| || || || ||||| || Sbjct 1306688 AAGGTTCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCGGTGGG 1306747 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || |||||| |||| || | || | ||||||| ||| || Sbjct 1306748 ATTCCCTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCGCTGCTCTCCAC 1306806 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| || || || | || || |||||||| ||||| Sbjct 1306807 CTCCAGTGTAATCGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 1306854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988995799440