Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2514 690 0.0 seq13 152 6e-32 seq19 105 8e-18 seq6 84.2 3e-11 >seq2514 Length=157033 Score = 690 bits (764), Expect = 0.0 Identities = 748/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||||||| ||||| |||||||| || ||||||||||| || ||||| |||||||| |||| Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 | ||||||||| | | || |||||||| || | ||||||||||||| ||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAG 7712 || |||||||| |||||||| || || ||||| ||||| ||||||| ||| | ||||| Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 7713 TGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGT 7772 |||||||||| || || || ||||| || || | |||||| || | ||||| ||||||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583 Query 7773 TGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGT 7832 | || ||| ||||||||||||| || ||||| || || ||||| || ||||| || | Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 7833 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTT 7892 | || ||||| |||||||| || | ||||| | || || ||| || ||||||| Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 7893 CACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAA 7952 | | | || | ||||||||| | ||||||||||| |||||||| || || || || | Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763 Query 7953 AGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGA 8012 | |||||||| ||||| | |||||| || |||||||| |||||||||||||| || |||| Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823 Query 8013 AGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAAC 8072 | |||| ||| |||| || ||||||||||| || |||||||| | || || ||| | Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883 Query 8073 CTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATG 8132 ||||||||| ||||| | | ||| ||||||| || || ||||| ||||| || |||| Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 943 Query 8133 CTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGT 8192 | ||| ||||| ||||||||||| |||||| || ||||||||||||||| ||||||| Sbjct 944 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGT 1003 Query 8193 ATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGA 8252 | | | ||| | | |||||| | | || || | ||||||| |||||||| | Sbjct 1004 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 1063 Query 8253 GCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAG 8312 ||| ||||||| || || |||||||| || || || ||||| | || ||||| || Sbjct 1064 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 1123 Query 8313 AAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGG 8372 ||| ||||| || |||||||| ||||| ||||| ||||| | || || |||| || | Sbjct 1124 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1183 Query 8373 GTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAA 8431 ||||||| || || |||||||| || ||||| ||||| | |||||||| || || ||| Sbjct 1184 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 1243 Query 8432 ATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGA 8491 | || || | | | ||||||||||||| ||||| ||||| || | ||| ||||| Sbjct 1244 A-AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGG 1302 Query 8492 TTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || | ||| ||||| ||| |||||||| Sbjct 1303 TTTTCAGTGCTGGTTATCCAATTACAGAA 1331 Score = 560 bits (620), Expect = 1e-154 Identities = 734/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 33832 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33773 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||||| || || || || ||||||||||| ||| Sbjct 33772 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTATAGAAAGTC 33713 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 33712 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 33653 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || ||||||| | |||| | |||| | ||| | || || ||||| Sbjct 33652 TTCAGAGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 33593 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | ||||| || || ||||| Sbjct 33592 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGACCAA 33533 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || || || |||||||| ||||| || || || |||| || || | ||| || | Sbjct 33532 AAGCGGTTGGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33473 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 33472 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 33413 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || || | ||| || || |||||||||||||| ||||| || Sbjct 33412 GCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGT 33353 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| ||||| || ||||| Sbjct 33352 GTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACGCCAAAA 33293 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 33292 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 33233 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACG-AATACCGACTAGACGTGC 6921 || ||||| |||||||| || ||||||||||| || || || ||| | || || || Sbjct 33232 ACCGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGTAATTGC-ACGGATCGAGC 33174 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| || | || ||||||||||| || ||||| Sbjct 33173 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCTCCGTGGAGAGCAACAAA 33114 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| | || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 33113 AGTCCACAAGCCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 33054 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | || ||||| | | | | ||||||||| || || || || || | ||| Sbjct 33053 TAGTAATAATAAAGAATGGGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTTAAGAA 32994 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || || || || | ||| ||| || | || || || ||||| || || || || Sbjct 32993 GTTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAGGTTACAAAGGT 32934 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || ||| ||| || || | ||||| || Sbjct 32933 TGTACCTGTGAACCAACCCCCTAAGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGA 32874 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 32873 CCAACCCACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32820 >seq13 Length=15658869 Score = 152 bits (168), Expect = 6e-32 Identities = 269/391 (69%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 |||| |||| || || |||| | ||| ||||||| ||||| || |||||||||||| Sbjct 4833549 AAGTAGAAAA--TTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATA 4833492 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 || | | ||||| | | | |||||| || | ||| | ||| |||| || ||| Sbjct 4833491 CCTATTATAGGCCAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGCA 4833432 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 |||| ||||||| | | ||||| | || |||||| | ||||||| || || ||||| Sbjct 4833431 TATTAGAAGATCGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTCC 4833372 Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903 | |||||| || | ||||| | || ||| ||| | ||||||| | || | Sbjct 4833371 TTTTGACCAAATCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCAAA 4833312 Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963 ||||||||| | |||||||||| || || | | || || | | ||| | Sbjct 4833311 TTAGAGGTTACCAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTGTT 4833252 Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023 ||||| | |||||| || |||| || ||||||| ||||| |||| ||| |||| ||| Sbjct 4833251 ACGCCTAACATGTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCATA 4833192 Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCA 8054 |||| || |||||| | || || ||||||| Sbjct 4833191 AAGTTAAAAGTACCAAATATTCCTAGAGGCA 4833161 >seq19 Length=16008726 Score = 105 bits (116), Expect = 8e-18 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 ||| ||||||||| |||||||| |||||||||||||| ||||||||||| | || || Sbjct 8025941 TCATCATCTTCAAT-AAAGTATTTTCTACAGTAGCACCATGAATAGCACATAACAGAGCA 8025999 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | || || | ||| || || ||| |||||||||| | ||| || ||||| || || || Sbjct 8026000 ACGCCCAATACACCGGCAACTCCCGTCATATGAAATGCGTTCAGTGTCCAATTATGAAAT 8026059 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCT 6790 || || | ||||| | ||| | ||||| ||| Sbjct 8026060 CCTTGGAAAAAGAGGATGAATCAAAATATAGCT 8026092 >seq6 Length=26894541 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| ||||||| | |||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 18468664 GAATGTATTTGCATCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAAT 18468605 Query 6682 AGCACAGAGCA 6692 ||| || |||| Sbjct 18468604 AGCGCATAGCA 18468594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622105249728160