Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 seq2 86.0 8e-12 >seq1 Length=48367220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 178/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || || || ||||| | || ||||||||| ||| |||||||| || || Sbjct 31903164 TGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCA 31903223 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || || || ||||| || ||||||||||| || ||||| || ||||| ||||| || Sbjct 31903224 CGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAA 31903283 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || |||| || | ||| ||||| | | || | || | |||| | ||| Sbjct 31903284 GCAAAAGCAATTAACCTCTCCGCAAA-ACTCTCGCCTCCG--TCGATCCACCGTAAAGCC 31903340 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 |||| ||||| || | | ||| || || |||| || || | ||| || ||||| Sbjct 31903341 CACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGGCGGTTCTTC 31903400 Query 127772 TCTGATGGATCTTTGATGTA 127791 || | | ||| |||||||| Sbjct 31903401 TCAGTAGAATCCTTGATGTA 31903420 >seq2 Length=23562801 Score = 86.0 bits (94), Expect = 8e-12 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 19331146 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 19331087 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | ||||| |||||| || | || || |||||||| || |||| || || || | Sbjct 19331086 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 19331027 Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| || || | ||||||||| | | | || | ||| | || |||| | || || Sbjct 19331026 GGTCTGCTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 19330970 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 12938 ||| |||||||| || | || || || || || ||| || ||| |||| ||| Sbjct 19330969 GGCATCAATTTCATCCACAAACACAATGCAAGGAGCATTCTCTTTGGC--CTTCTTGAAG 19330912 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| || |||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 19330911 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 19330852 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 19330851 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 19330793 Query 13058 CGTCCCTGG 13066 || ||||| Sbjct 19330792 AGTACCTGG 19330784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487920536240