Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17 147 3e-30 >seq17 Length=14661173 Score = 147 bits (162), Expect = 3e-30 Identities = 539/836 (64%), Gaps = 21/836 (3%) Strand=Plus/Minus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| || || ||||| || | || ||||| | ||||| | ||||||| || Sbjct 8256954 TTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAACTCCATCCAATCGAATGGATTA 8256895 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 ||| | || |||| | || || || ||| || ||| || || || || || Sbjct 8256894 GCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAACAGCCTATCAGCTACGAACTCA 8256835 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 || || || |||| ||| | ||| ||||| | || | || ||||| ||| | Sbjct 8256834 ATATACTGACTCATCAACTCCCCGTTCATCCCTACCAACGCGCATGGCAGCGCGTCCACC 8256775 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCC 159889 | ||||||| ||||||| || || || || |||| ||| | || | || | | | Sbjct 8256774 ACAAACTCCCTCTCAATATCCACTGCATCCTTCACTATCCCCTTCACTTGCTCCTCACTC 8256715 Query 159890 GGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | || | | || | || |||||||| || || || || || || Sbjct 8256714 AGCTTCTTCCTCAGCAAGCTGT------AGAGAAGGCACGCGAAATCACAATGAAGCCCT 8256661 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 || || || ||||| |||||||| || | | | | |||||||| | ||||||| ||| Sbjct 8256660 TCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAACCCCGGCATCAACCCACGCTTTTTT 8256601 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 | |||||| || || ||||| | || | | ||||| ||||| |||||| ||||| || Sbjct 8256600 AACCAAAATATCGCA-CAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGC 8256542 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 || |||||||| | ||| || | |||| |||||| |||||| || Sbjct 8256541 AACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAA---TCCACCGCAAGGCCCACCGTGC 8256485 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| || | ||||||| |||| || | ||||| | | || ||||| Sbjct 8256484 CTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAGACGATTCTTCTCCTCAGA 8256425 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||||||| ||| | | ||| |||||| |||| ||| | ||| || || || Sbjct 8256424 ATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCTGAGTGGATATTCTCAATCGC 8256365 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACT-GCACCTCCTGTGTGAACCTTT 160304 ||||| || ||| ||| ||||||| || ||| | ||||| | |||| | Sbjct 8256364 GATCTGGAATCCGTAAAAAGCACGCGCCTCC-GAGACTTGGACCTCTTTCATGAAACGCC 8256306 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | ||| || | ||| || ||||| || | || ||||||| Sbjct 8256305 CGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAAGGCAAGGACATGAGAGA 8256246 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 |||| || ||||||| ||||| ||||||||||| | || | | | Sbjct 8256245 TGAAGTGCTTCTCGTC----GGGAGTCAGGTTTTCCCAGTGGCGGATATCCGACGAGAGA 8256190 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || || ||||| || |||| ||| | |||||||| ||||||| Sbjct 8256189 TCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTCCCAGAT 8256134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130212247840