Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 122 6e-23 seq11 102 6e-17 seq17 100 2e-16 seq4 98.7 7e-16 seq1 84.2 2e-11 >seq6 Length=26894541 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||||| |||||||||||||| ||||| ||| || ||||| || ||||||| Sbjct 10380880 CATC-CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAAT 10380822 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| ||||| || ||||| |||| || | | ||||||||||| Sbjct 10380821 CTGCAAGAGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCG 10380762 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||| ||||| || || ||||| | | | ||| || | ||||| Sbjct 10380761 GGGGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTT 10380702 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | || ||||| || || |||||||| || |||||||| ||||| Sbjct 10380701 CAACCTCAAGCGTGATTGTATTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq11 Length=18885544 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || || | ||| | ||||| || || || ||||| ||||||||| Sbjct 145360 CCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 145301 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || || | || |||| |||||| ||||||| || Sbjct 145300 AAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAATATTAGACGCTGTTGATCCGGTGGG 145241 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || || || | ||| | | | ||||| ||| ||||| Sbjct 145240 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 145182 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 |||| ||| || || || || || | ||||| |||||||||||||||| Sbjct 145181 CTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATGT 145132 >seq17 Length=14661173 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| |||||||| |||| ||| ||| || || |||||||| | Sbjct 1747667 CATC-CCACCACGCAGACGGAGTACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGT 1747609 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | ||| |||| || | ||||||||| |||| || | | ||||||||| | Sbjct 1747608 CTGCAAGGGTGCGACCATCTTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGCTGATCTG 1747549 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || || || || ||| || | | | | || |||| ||||| Sbjct 1747548 GTGGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCTGAGCTTT 1747489 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||||||||||| || || || || || || || || |||||||| Sbjct 1747488 CCACCTCCAAAGTAATTGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 1747437 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || |||||||||| ||| ||| || || |||||||| | Sbjct 1747439 CATC-CCACCGCGCAGACGGAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGT 1747381 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | ||||| || ||||||| || | ||||| |||| Sbjct 1747380 CAGCAAGGGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCG 1747321 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||| ||||| || ||| | || | || ||| | |||||| | || Sbjct 1747320 GTGGGATCCCTTCCTTGTCCTGGATCTTTGTCTTCACATTGTCAAT--TGTGTCAGAACT 1747263 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| || || || || || | ||| || || ||||||||||| Sbjct 1747262 CTCAACCTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 1747209 >seq4 Length=23188140 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 ||||| || || || ||||| |||||||||||| || |||| || | ||||||||| Sbjct 1307342 GTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCG 1307401 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 | || || ||||| || ||||||| || | ||| || ||||| || || ||| Sbjct 1307402 GCGAAGATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTG 1307461 Query 39643 ATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 | ||| | | | ||||| ||| ||||| || | || || || || || || ||||| Sbjct 1307462 A-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAAAGT 1307520 Query 39702 TTTTACGAAGATCTGCAT 39719 ||| |||||||||||||| Sbjct 1307521 TTTCACGAAGATCTGCAT 1307538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||||||||| ||||| | | |||| ||||| || |||||| |||| Sbjct 1306664 TCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGCTTCCCGGCAAAG 1306723 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||| ||||||| || | || || ||||| |||||| || | ||| Sbjct 1306724 ATCAGACGCTGTTGATCCGGTGGGATTCCCTCCTTGTCCTGGATTTTTGCCTTGA-CGTT 1306782 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| ||| ||||| |||| ||||| || || || || || || || || Sbjct 1306783 GTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCTGTCAAGGTCTTCAC 1306842 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 1306843 AAAAATCTGCAT 1306854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 ||||| || || || |||||||||||||||||| || |||| || | ||||||||| Sbjct 1307114 GTGCTCTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCG 1307173 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 |||| || ||||| || ||||||| || | ||| || || || || || || Sbjct 1307174 GCAAATATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTATCTTGAATCTTGGCCTTG 1307233 Query 39643 ATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 | ||| | | | ||||| ||| ||||| || | ||||| || || || || || || Sbjct 1307234 A-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTAATGGTCTTCCCTGTCAAGGT 1307292 Query 39702 TTTTACGAAGATCTGCAT 39719 || || || |||||||| Sbjct 1307293 CTTAACAAATATCTGCAT 1307310 >seq1 Length=48367220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || ||||| || | ||| ||| || || || || || || || Sbjct 4826390 CCACCCCTCAAGCGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCA 4826449 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| ||| | ||||| | ||| ||||| || | || Sbjct 4826450 AGTGTACGTCCATCTTCTAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGG 4826509 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| ||||| ||| | | |||| | ||| |||| ||| | Sbjct 4826510 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTGTCGAT--TGTATCTGAAGATTCGA 4826567 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 | || | || || || || ||||| || || || ||||||||||||||||| | || || Sbjct 4826568 CCTCGAGGGTTATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATGTCTTCTGGTT 4826627 Query 39731 CGTTGGTTT 39739 ||| ||| Sbjct 4826628 TCTTGCTTT 4826636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347358956812562