Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq14 127 3e-24 seq5 87.8 2e-12 >seq2 Length=23562801 Score = 156 bits (172), Expect = 5e-33 Identities = 291/421 (69%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || | ||||| || || || | |||||| Sbjct 19331115 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19331056 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||| ||||||||||| || || || | ||||||||| || | Sbjct 19331055 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19330996 Query 16038 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 |||| | | |||| |||||||||||||||| ||||| | || || ||||| || Sbjct 19330995 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAACACAATGCAAGGA 19330936 Query 16098 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 ||| || || |||| ||||||||||| || || ||| || |||||||||| Sbjct 19330935 GCATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAA 19330878 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 ||||||| ||||| | | | ||| || | || || || ||| | |||||| ||| Sbjct 19330877 ACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCA 19330819 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 16274 || || ||| ||||||||||| || |||||||| || | || || ||||| Sbjct 19330818 ATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTC 19330759 Query 16275 GGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||| | | ||| || | ||| |||||||||| | ||| ||||| ||||| | || Sbjct 19330758 GGAA--TGCGAGCCCCTACTGCAGTAAATCTCTCAGGCTTCTTGAGAAACTCCACTACCT 19330701 Query 16333 C 16333 | Sbjct 19330700 C 19330700 Score = 138 bits (152), Expect = 1e-27 Identities = 288/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || | ||||| || || || | |||||| Sbjct 19351730 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19351671 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||| ||||||||||| || || || | ||||||||| || | Sbjct 19351670 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19351611 Query 16038 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 |||| | | |||| |||||||||||||||| ||||| | || || ||||| || Sbjct 19351610 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAATACAATGCAAGGA 19351551 Query 16098 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGG------CGCCCACAC 16149 ||| || || |||| ||||||||||| || || || | || |||| Sbjct 19351550 ACATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAC 19351493 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 ||||||||||||| ||||| | | | ||| || | || || || ||| | |||| Sbjct 19351492 CAACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCA 19351434 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || ||||| || ||| ||||||||||| || |||||||| || | || || || Sbjct 19351433 CCAGCAATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACA 19351374 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| ||| | || || | || | |||||||||| | ||| ||||| ||||| Sbjct 19351373 CCTTTCGGAGTGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACT 19351314 Query 16329 ATCTC 16333 | ||| Sbjct 19351313 ACCTC 19351309 >seq14 Length=17716633 Score = 127 bits (140), Expect = 3e-24 Identities = 254/371 (68%), Gaps = 18/371 (5%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 |||||||||||||| ||||||| ||||||||| | || || || | |||||| || || Sbjct 9972193 TCAAAACCATCCATTTCTGTCAGAAGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCT 9972134 Query 16032 GGCATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||| | ||| | |||| ||||||| |||||||| ||||| | || Sbjct 9972133 ------CCACCGATTCCTGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAAT 9972080 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC 16143 || ||||| || ||| || || |||| ||||||||||| || | ||| | Sbjct 9972079 ACAATGCAAGGAGCATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCTAGAGGCTC 9972022 Query 16144 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTA 16202 | ||||| ||||||||||| ||||| | | | ||| || | || || || ||| Sbjct 9972021 CAACACCGACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAATGGAACACCC 9971963 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 | |||||| ||||| || ||| |||||||| || || |||||||| || | || Sbjct 9971962 GCTTCACCAGCAATTGCCTTGGCCAGAAGAGTTTTCCCAGTACCTGGAGGCCCAACAAGA 9971903 Query 16263 AGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 16322 || | ||| |||||| || || | || | |||||||||| | ||||||||| Sbjct 9971902 AGAACGCCTTTTGGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTAAGAAAC 9971843 Query 16323 TCCACAATCTC 16333 ||||| | ||| Sbjct 9971842 TCCACTACCTC 9971832 >seq5 Length=25802683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/260 (69%), Gaps = 16/260 (6%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCA 15974 |||||| | |||| | |||||| || || | |||| || ||||| || | | | | Sbjct 24866554 ATCAAGAACATCAGGTCTATTCGTAGCAGCCAATACAATAACACCTGAATTGCCTGA--A 24866497 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| | ||| |||||||| || || | || |||||| | | Sbjct 24866496 AATCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA--C 24866439 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | ||||| | | ||| | || || ||||||||||||||||| || || |||| Sbjct 24866438 CTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATGC 24866379 Query 16093 ATGGTTGATTTTCGCGA----GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | || || ||| ||| || ||||| | ||| | || | | || || || Sbjct 24866378 A-GGGTGCTTT---CGACTTGGCTTTCTCAAACAAATCTCTCACTCTCGACGCTCCAACT 24866323 Query 16149 CCAACAAACATCTCCACAAA 16168 |||||||||||||| ||||| Sbjct 24866322 CCAACAAACATCTCAACAAA 24866303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722893170080