Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq17 84.2 3e-11 >seq1 Length=48367220 Score = 104 bits (114), Expect = 3e-17 Identities = 180/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||||||||||||||| || ||||| | ||| || |||| || || ||||| || || Sbjct 31903163 ATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCC 31903222 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||| |||| |||||| || ||||||||||| || || || || || || ||||| || Sbjct 31903223 ACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCA 31903282 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACT-TGTCGAACCACTTGAGAGCCC 119685 || ||||| | || | ||| |||||| || | || ||||| |||| | ||||| Sbjct 31903283 AGCAAAAGCAATTAACCTCTCCGCAAAA-CTCTCGCCTCCGTCGATCCACCGTAAAGCCC 31903341 Query 119686 AGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTT 119745 | | ||||| | | || || || || | ||||| | || || | ||||| | Sbjct 31903342 ACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGGCGGTTCTTCT 31903401 Query 119746 CAGCACCATCCTTAATATA 119764 ||| | |||||| || || Sbjct 31903402 CAGTAGAATCCTTGATGTA 31903420 >seq17 Length=14661173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/152 (73%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGA 119562 ||||||||||||||| || ||||| | ||| || |||| || || || ||||| | Sbjct 8256670 ATGAAGCCCTTCATCTCGCGAGATCAACTCGTT--TGAA--AAGGTTAACCCCGGCATCA 8256615 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 || | || |||| |||||| || ||||||||||| || || || || || || |||| Sbjct 8256614 ACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCA 8256555 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAA 119654 | || || ||||| | ||| | ||| || ||| Sbjct 8256554 CGCAAGCAAAAGCAACTAGCCTCTCCGCGAAA 8256523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957491429200