Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 seq14 120 4e-22 seq5 89.7 6e-13 >seq2 Length=23562801 Score = 149 bits (164), Expect = 7e-31 Identities = 287/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 19331115 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19331056 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||| ||| ||||||| || || || | ||||||||| || | Sbjct 19331055 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19330996 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| | | |||| |||||||||||||||| ||||| | || ||||| || || Sbjct 19330995 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAACACAATGCAAGGA 19330936 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 ||| || ||| | | |||||||| || || | ||| || |||||||||||| Sbjct 19330935 GCATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAAC 19330876 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 ||||| ||||| | | | ||| || | || || || ||| | |||||| ||||| Sbjct 19330875 ATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCAAT 19330817 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGG 9583 || ||| ||||||||||| || |||||||| || | || || |||| || Sbjct 19330816 TGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTCGG 19330757 Query 9584 AATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || | | ||| || | ||| |||||||||| | ||||||||| ||||| | ||| Sbjct 19330756 AA--TGCGAGCCCCTACTGCAGTAAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 19330700 Score = 131 bits (144), Expect = 2e-25 Identities = 284/423 (67%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 19351730 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19351671 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||| ||| ||||||| || || || | ||||||||| || | Sbjct 19351670 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19351611 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| | | |||| |||||||||||||||| ||||| | || ||||| || || Sbjct 19351610 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAATACAATGCAAGGA 19351551 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG------CGCCCACACCA 9458 ||| || ||| | | |||||||| || || | || | || |||||| Sbjct 19351550 ACATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACACCA 19351491 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | | ||| || | || || || ||| | |||||| Sbjct 19351490 ACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACC 19351432 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 ||||| || ||| ||||||||||| || |||||||| || | || || |||| Sbjct 19351431 AGCAATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACC 19351372 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAAT 9637 ||| | || || | || | |||||||||| | ||||||||| ||||| | Sbjct 19351371 TTTCGGAGTGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTAC 19351312 Query 9638 CTC 9640 ||| Sbjct 19351311 CTC 19351309 >seq14 Length=17716633 Score = 120 bits (132), Expect = 4e-22 Identities = 250/369 (68%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 |||||||||||||| ||||||| ||| ||||| | || || || | |||||| || || Sbjct 9972193 TCAAAACCATCCATTTCTGTCAGAAGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCT 9972134 Query 9339 GGCATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392 ||||| | ||| | |||| ||||||| |||||||| ||||| | || Sbjct 9972133 ------CCACCGATTCCTGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAAT 9972080 Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 ||||| || || ||| || ||| | | |||||||| || || || ||| || Sbjct 9972079 ACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCTAGAGGCTCCA 9972020 Query 9453 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGA 9511 ||||| ||||||||||| ||||| | | | ||| || | || || || ||| | Sbjct 9972019 ACACCGACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAATGGAACACCCGC 9971961 Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9571 |||||| ||||| || ||| |||||||| || || |||||||| || | || || Sbjct 9971960 TTCACCAGCAATTGCCTTGGCCAGAAGAGTTTTCCCAGTACCTGGAGGCCCAACAAGAAG 9971901 Query 9572 GGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATC 9631 | || |||||| || || | || | |||||||||| | ||| ||||| || Sbjct 9971900 AACGCCTTTTGGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTAAGAAACTC 9971841 Query 9632 CACAATCTC 9640 ||| | ||| Sbjct 9971840 CACTACCTC 9971832 >seq5 Length=25802683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 178/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9281 |||||| | |||| | |||||| || || | |||| || ||||| || | | | | Sbjct 24866554 ATCAAGAACATCAGGTCTATTCGTAGCAGCCAATACAATAACACCTGAATTGCCTGA--A 24866497 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| | || |||||||| || || | || |||||| | | Sbjct 24866496 AATCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA--C 24866439 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | ||||| | | ||| | || || ||||||||||||||||| || ||||| | Sbjct 24866438 CTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATGC 24866379 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || || ||| | ||| | ||||| | ||| | || || || || || ||| Sbjct 24866378 A-GGGTGCTTTCGACTTGGCTTTCTCAAACAAATCTCTCACTCTCGACGCTCCAACTCCA 24866320 Query 9459 ACAAACATCTCCACAAA 9475 ||||||||||| ||||| Sbjct 24866319 ACAAACATCTCAACAAA 24866303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962259853360