Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2514 616 2e-171 seq13 125 9e-24 seq8 87.8 2e-12 seq1 82.4 9e-11 >seq2514 Length=157033 Score = 616 bits (682), Expect = 2e-171 Identities = 739/999 (74%), Gaps = 4/999 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | ||||| || ||| | || ||||| Sbjct 1340 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTT 1281 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| |||||||||| ||| | ||| | |||||| |||| || || |||| ||||| Sbjct 1280 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCAT 1222 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||| || || || ||||| ||||| || |||||||| || |||| || || | || Sbjct 1221 TGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1162 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| ||||| |||||||| || ||||| |||| || || || | ||||| Sbjct 1161 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTT 1102 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || ||||| ||||||| | Sbjct 1101 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 1042 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | |||||||| |||||||||||||| Sbjct 1041 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACT 982 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || |||||||||| || ||||| ||| || |||||||| ||||| || || | Sbjct 981 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCGG 923 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | | ||||| |||||||||| || || || | |||| Sbjct 922 CGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGC 863 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || || || ||||| || || |||| ||| |||| ||||| || ||||||||||||| Sbjct 862 CTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCC 803 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| || |||||| | || ||||| ||||| |||||||| || || ||| | Sbjct 802 TTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 743 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| |||||| || | | |||||||| |||| ||| || Sbjct 742 CTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 683 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | ||||||| ||||||||||| ||||| || || || ||||| || || |||| Sbjct 682 CTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATG 623 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| ||||| || |||||||| ||||| | || | Sbjct 622 GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATT 563 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| | || || |||||||| || || |||||||||||||| | || | ||||| | Sbjct 562 TCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 503 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| ||||| || || |||||||| |||||||| || | ||||| |||||||||||| Sbjct 502 TGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 443 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || ||||| || | | ||||| ||| || ||||||||||||||||| | Sbjct 442 TAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 383 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 180735 | ||||||||||| || ||||| || ||||| || |||| Sbjct 382 AACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 571 bits (632), Expect = 7e-158 Identities = 737/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || |||||||| ||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| |||| | ||||| ||| |||| || || || ||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| |||||||| |||||| | || ||| || ||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || | ||| ||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGT 181783 || ||||||||||| |||| || || ||||||||| | | ||||||||||||||||| Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG- 33178 Query 181784 CTAATCGG----AATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATT 181839 ||| | | | ||||| || ||||| || || || || ||||| ||||| || || Sbjct 33179 ---ATCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 181840 CGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTT 181899 || |||||||| || || ||||| || || || || |||||||||||||||| ||||| Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 181900 CGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCT 181959 || || || || || || || ||| | ||||| |||| || |||||||||||||| || Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 181960 CAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAAT 182019 || || || ||||||||||| ||||| ||| | |||| | || | || | || || Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 182020 TCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAA 182079 ||| |||| || || || |||||| | | | |||| ||||| |||||||| ||| Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 182080 AGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTG 182139 || || | ||||||||| |||||||| ||||| ||||| || || |||||||| || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 182140 GTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 182199 ||| || || || || |||| ||| |||||| | ||||| |||||||||||| | || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 182200 TGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 182259 ||| || || | ||| | |||| ||| | | || | ||||||| ||||| ||||| Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 182260 TCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGAC 182319 ||||| |||||||| || || || |||||| | ||| | ||||| || || || ||||| Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 182320 GTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGA 182379 ||||| || || || ||||| || |||||||| | ||||| ||| | || | || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 182380 TCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||| || ||||| ||| || | ||||||||||| || ||||| | || ||||| || Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 110740 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 110681 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 110680 CCTACTTGGGGAG 110668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 131423 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 131482 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 131483 CCTACTTGGGGAG 131495 >seq13 Length=15658869 Score = 125 bits (138), Expect = 9e-24 Identities = 263/391 (67%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 180214 TGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACA 180273 |||| || || || | ||| || || |||| ||| |||| ||| |||| ||||| ||| Sbjct 4833161 TGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAGCATTACA 4833220 Query 180274 TCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCT 180333 |||| || |||| || |||||| | || ||| ||||| | | | | || | | | Sbjct 4833221 TCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAATGACTCCTTATCCA 4833280 Query 180334 CCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGT 180393 | ||||| |||| |||| |||||| || | ||||||| ||| ||| | Sbjct 4833281 ATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAAAATGAAT 4833340 Query 180394 CCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCAC 180453 || || | ||||||| ||||||||| | ||||| || || ||||||| | ||| | Sbjct 4833341 CCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTC 4833400 Query 180454 ATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTC 180513 |||| | || || | | ||||||| | ||||| || |||| ||| | ||| | | Sbjct 4833401 ATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCATTCTTTAC 4833460 Query 180514 ACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 180573 | |||||| | | | |||||| | | || |||||||||||| | | || | |||| Sbjct 4833461 ATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTACTTTTGGTATTAGCA 4833520 Query 180574 CCATGGCATTCAACCTCAACGGTTTCAACTT 180604 | ||| | |||| || || |||| |||| Sbjct 4833521 CTATGCCTCTCAATCTAAA--TTTTCTACTT 4833549 >seq8 Length=18835763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 13450411 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 13450352 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 13450351 CCTACTTGGGGAG 13450339 >seq1 Length=48367220 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||||||||||||||||| ||||| | || ||||||| | |||||||||||||| || Sbjct 6402558 TTCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGCAT 6402499 Query 141314 CCTACCTGGGGAG 141326 ||||| ||| ||| Sbjct 6402498 CCTACTTGGAGAG 6402486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610377618280560