Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2514 489 2e-133 seq6 127 2e-24 seq18 113 5e-20 seq1667 95.1 1e-14 >seq2514 Length=157033 Score = 489 bits (542), Expect = 2e-133 Identities = 679/948 (72%), Gaps = 2/948 (0%) Strand=Plus/Minus Query 169438 TATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TT 169496 ||| |||| |||||||||||| | |||||||| ||| | || ||| | | ||| || Sbjct 1295 TATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATT 1237 Query 169497 CATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGC 169556 || | || |||||||| || ||||| || || || || || || | ||||| || | Sbjct 1236 TATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTC 1177 Query 169557 GGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGC 169616 || ||| | | ||||| ||||| ||||| |||||||| || |||| | || || Sbjct 1176 TGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGC 1117 Query 169617 TATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAA 169676 ||| || | ||||| |||||||| |||||||| ||| | |||||||||||||| || || Sbjct 1116 TATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAA 1057 Query 169677 TGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGG 169736 || ||||||||| || | | | | |||||| | ||||| | | |||||||| Sbjct 1056 CGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 997 Query 169737 AAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 | |||||||||| | | | | || |||||||||||||| ||||||||| || Sbjct 996 GCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTC 937 Query 169797 TGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATT 169856 || || || | || || ||||| ||||| | || ||| | ||||| || || Sbjct 936 AGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTT 877 Query 169857 CTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGC 169916 || ||||| ||||| ||||| ||||| |||||||| ||||||||| | || ||||| || Sbjct 876 TTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGC 817 Query 169917 AGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGG 169976 ||||| ||||| || ||||| || || |||||| ||| ||||| || | ||||| || Sbjct 816 TGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGG 757 Query 169977 ATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAAC 170036 || ||||| || ||||||||||| | || || || | | ||||| ||||| || Sbjct 756 CTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 697 Query 170037 AGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACAT 170096 ||| | || || || | ||||| | || || ||||| |||||||| || || || Sbjct 696 AGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATAT 637 Query 170097 AGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTC 170156 ||||| || || ||||| ||||| || | |||||||| |||||| || |||||||| Sbjct 636 CGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTC 577 Query 170157 AAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTAT 170216 | | |||| |||||| |||| | || ||||| ||| || | ||||| || || | Sbjct 576 TCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 517 Query 170217 GGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGA 170276 ||||| |||| ||||| ||||| | ||||||||||| || |||||||| || ||||| Sbjct 516 AGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 457 Query 170277 TGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTAT 170336 | | | || | | || |||| |||| || | ||| | || ||| | ||||| Sbjct 456 TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTAT 397 Query 170337 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||||||| | ||||| || || ||||| ||||||||||| Sbjct 396 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 349 Score = 379 bits (420), Expect = 2e-100 Identities = 708/1039 (68%), Gaps = 23/1039 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || | || ||||| ||| Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || |||||| || Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | | || || ||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || || || |||| ||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || |||| || ||||| |||||||| ||| | | |||||||| | || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 170889 CTTGTAGGCATCA-GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCAC 170947 || | || | ||||||| || ||| |||||||||||| | || || || || Sbjct 33180 TCCGT-GCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGT 33238 Query 170948 TAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGG 171007 | | || ||||| ||||||||||||||| |||||||||| || || || || Sbjct 33239 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33298 Query 171008 TGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 171067 || ||||| || ||||| | ||| | || | ||||| || || || ||| |||| Sbjct 33299 CGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAA 33358 Query 171068 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCA 171127 |||||||| |||||||| ||||| || || | || | || | |||| || ||||| Sbjct 33359 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 33418 Query 171128 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAAT 171187 |||||| || || | || || || | ||||| || |||| | Sbjct 33419 TGGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGT 33461 Query 171188 TCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGAT 171247 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 33462 GCAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 33517 Query 171248 TACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTT 171307 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | || Sbjct 33518 CACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 33577 Query 171308 ACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 171367 ||| ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 33578 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 33637 Query 171368 AGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGA 171427 ||||| || || ||||| | || || || || || ||||| || || | ||||| || Sbjct 33638 TGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 33697 Query 171428 AGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 171487 ||| || || || ||||||||||| || || ||||| ||| | |||||||| || | || Sbjct 33698 AGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGC 33757 Query 171488 ATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACC 171547 |||||| | | || || || ||||| ||| | ||||||| || || || |||| Sbjct 33758 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 33817 Query 171548 AAGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 33818 CCGTGGAAACGCTCTTTAA 33836 >seq6 Length=26894541 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| |||||| || ||||| || || |||||||||||||||||||| ||| Sbjct 23160511 GAGAATCCGGCTTGGTATACCCAGTACACACCGTACCAAGCTGAGATATCTCAGGGTAGA 23160570 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 ||||| |||| ||||||||||||| | ||||| || ||||| ||||| || || || Sbjct 23160571 TTGGAGTCTTTGCTCAATTACCAAACCATGATCACGGATCTTACTGGATTGCCTATGTCA 23160630 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||||| ||||| || ||||| |||||| Sbjct 23160631 AATGCTTCATTGCTTGATGAAGGGACTGCTGCTGCAGAGGCAATG 23160675 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| || ||||||||| |||| ||||| ||||| ||||||||| Sbjct 23160991 GATATTGTTGTTGGTTCAGCTCAGAGGTTTGGTGTTCCAATGGGGTATGGTGGTCCTCAT 23161050 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 ||||| || || ||||| || | |||| ||||| | ||| ||||| |||||| | | Sbjct 23161051 GCTGCGTTTTTGGCAACCTCACAAGAGTACAAGAGGATGATGCCTGGTAGAATTATTGGT 23161110 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATAC----AGATTAGCACTACAGACTAGA 153920 || ||| || ||| | ||| ||||| | | | | || | || ||||| Sbjct 23161111 GTTAGT--GTTGATTCTTCAGG----AAAGCCTGCTCTGCGCATGGCGATGCAAACTAGG 23161164 Query 153921 GAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCA 153970 ||||||||||| | || ||||| || ||||| |||||||| || ||||| Sbjct 23161165 GAGCAGCATATTCGCAGGGACAAGGCTACCAGCAACATCTGTACTGCTCA 23161214 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | || |||||||| || ||||| ||||||||||| Sbjct 23164056 TGGAGCTGATGTTTGCCATCTCAATCTCCACAAAACATTTTGCATTCCGCATGGAGGTGG 23164115 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 23164116 TGGTCCTGGCATGGGTCCTATTGGTGT 23164142 >seq18 Length=14966190 Score = 113 bits (124), Expect = 5e-20 Identities = 130/171 (76%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| |||||| || ||||| | || |||||||||||||||||||| ||| Sbjct 4654040 GAGAATCCAGCTTGGTATACGCAATACACACG-TACCAAGCTGAGATATCTCAGGGTAGA 4653982 Query 153324 TTGGAAGCTTTATTCAATTACC-AAACGCTCATCACAGAACTTACAGGATTACCAATAGC 153382 ||||| |||| ||||||||| |||| | || || || ||||| ||||| || || | Sbjct 4653981 TTGGAGTCTTTGCTCAATTACCAAAACCATGATTACGGATCTTACTGGATTGCCTATGTC 4653922 Query 153383 AAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG-CTAT 153432 |||||| || | | ||||||| ||||| || ||||| |||||| |||| Sbjct 4653921 AAACGCTTCATTGCTTGATGAAGGGACTGCTGCTGCAGAGGCAATGACTAT 4653871 >seq1667 Length=4831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| | || |||||||| || | || ||||||||| Sbjct 2905 TTTGATATTATGGATGACTGGTTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGGT 2964 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||| ||| || | | | || ||||||||| || | ||||| Sbjct 2965 CTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTT 3024 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | | || || |||||| || Sbjct 3025 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGAAAGGTTGCAACTTCTTA 3084 Query 170709 ACAGCAGCAGTTTCCACACCTG 170730 || || | |||||| || |||| Sbjct 3085 ACCGCTGTAGTTTCTACTCCTG 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579194598237760