Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2514 614 6e-171 seq13 114 1e-20 seq1667 86.0 7e-12 seq15 86.0 7e-12 >seq2514 Length=157033 Score = 614 bits (680), Expect = 6e-171 Identities = 731/989 (74%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || ||| | || ||||| || || || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 |||||||| ||| | ||| | |||||| ||||| || || |||| ||| | ||||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || ||||| || || || |||||||| || |||| || || | ||||| ||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 ||||| |||||||| || | ||| ||||| ||||| || | ||||| || || || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| ||||| | ||||| ||||| || ||||| ||||||| | ||| | || Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | |||||||| ||||| ||||||||| | || Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | ||||||||||| ||||| ||||||||| || || || || || || || | ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | ||||| |||||||||| ||||| || |||| ||||| || ||||| Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || || |||| ||| | || ||||| ||||||||||| || || ||||| || Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| || Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 |||||| || ||| | | | || || || || |||| ||||| || | || Sbjct 732 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 673 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| || || ||||| |||||||| || || |||||||||||||||||||| || || Sbjct 672 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 613 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || |||||||||||||| ||| || |||||||| || || || || |||||| | || Sbjct 612 CCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGC 553 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 ||| |||||||| || || ||||||||||| || | || | ||| ||||| ||||| Sbjct 552 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 493 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 || || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 492 TCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 433 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 |||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| || Sbjct 432 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 373 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCTG 168850 || || ||||| || || || ||||||| Sbjct 372 TCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 526 bits (582), Expect = 2e-144 Identities = 729/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | |||||||| ||| Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| |||| | || || ||| |||| |||||| | ||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || || || ||||| ||||| ||| | || ||||| || | ||||| |||||| Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGC---CAGTTCCTATTTGGAAGGTTGCAACTTC 32996 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || ||| |||||| | | | | || || | | || |||||| Sbjct 32997 TTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGG 33056 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| ||||| | |||| ||| Sbjct 33057 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTT 33116 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || || || || | | | || ||||| ||| | | || |||||| | || Sbjct 33117 GTTGCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 33176 Query 169664 CGTCTTATTGGCATC-CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 || | || || || ||||||||||| || |||||||||||||| ||||| || || Sbjct 33177 CGA-TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782 ||| ||| || || || || ||||| || ||||| ||||||||||| || || Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842 ||| ||| |||| || || | ||| | | || | |||||||| || || ||||| | Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 169843 GAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTAT 169902 ||| ||||| || |||||||| || || || | ||||||| || |||| | ||||| Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 169903 CCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAA 169962 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 169963 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 170022 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 170023 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTT 170082 ||| || || || || |||| ||||| || || |||||| | ||||| || ||||| || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 170083 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 170142 ||| || || | ||| | |||| || |||| | |||| || ||||| || || Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 170143 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 ||||| || || ||||| |||||| ||| | ||||| |||||||| ||||||||||| Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 ||||| |||||||| || || || |||||||| ||||||| ||| |||| || || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 114 bits (126), Expect = 1e-20 Identities = 246/368 (67%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 ||| ||| ||||| || |||| |||| || ||||| | || || || |||| ||| Sbjct 4833136 GGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATG 4833195 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||| |||||||||| | || || || | || || || ||| | ||||| | Sbjct 4833196 ATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACA 4833255 Query 168424 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 168483 || ||| || | || | | || |||||| || |||||| || ||| | | Sbjct 4833256 GGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTG 4833315 Query 168484 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 168543 | | || || | ||| |||||| || | ||||||| || || ||| | ||| Sbjct 4833316 ATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAA 4833375 Query 168544 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCT 168603 ||||| || ||||||||| |||||||||| || || | ||||||| |||| ||| Sbjct 4833376 GAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCT 4833435 Query 168604 TCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATC 168663 || |||| ||| | || || || |||||| | | | | |||||| | | || ||| Sbjct 4833436 AGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATC 4833495 Query 168664 TGGTTCAC 168671 |||||||| Sbjct 4833496 TGGTTCAC 4833503 >seq1667 Length=4831 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCT-CAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGG 169365 || ||| || | ||||||||| | | || | ||||| ||||| || | ||||||||||| Sbjct 2905 TTTGATATTATGGATGACTGGTTACGAAAG-GACCGTTTTGTTTTTGTGGGTTGGTCTGG 2963 Query 169366 TCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTT 169425 |||| | || |||| ||||||| |||| | || || ||| |||| | || | | || Sbjct 2964 TCTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTT 3023 Query 169426 TGTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTT 169482 ||| || || ||||| ||||| ||| | || |||| || || |||| ||||| Sbjct 3024 TGTAACCTCATGGTATACCCATGGATTGGCCAGTTCC---TATTTGAAAGGTTGCAACTT 3080 Query 169483 CCTCACTGCTGCTGTCAGTACACCTGCT 169510 | | || |||| || ||| |||||| Sbjct 3081 CTTAACCGCTGTAGTTTCTACTCCTGCT 3108 >seq15 Length=15134944 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 170185 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGC 170244 |||||| ||||||||||| |||| |||||||| || || || ||| || | ||||| | Sbjct 11738122 AGATCCTGAATTTGAGACTTTCTGTACCAAAAATATTCTTTTAAATAAAAGCATTCGTAC 11738063 Query 170245 ATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||| |||| || ||||| || ||||||||| | || ||||| || | ||||| || Sbjct 11738062 TTGGATGGCGACTTAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGAAGGTTCTACC 11738003 Query 170305 GAGAGGTAACGCACT 170319 | || ||||| || Sbjct 11738002 CCGTGGAAACGCTCT 11737988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574455547167120