Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2514 659 0.0 seq13 134 2e-26 seq1667 95.1 1e-14 >seq2514 Length=157033 Score = 659 bits (730), Expect = 0.0 Identities = 725/962 (75%), Gaps = 2/962 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 ||||| || ||| |||| ||||| || ||| ||||||| ||||| | | | ||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || |||| ||| | ||||| || || || ||||| |||||||||||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | ||||| ||||| ||||| |||||||| || |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || || | ||||| ||||| || |||||||| |||||| |||||||||| Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 | | |||||||| ||||||| | || | || | |||||| | | ||| | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 |||||||| |||||||||||||| || |||||| |||||||||||||||||| ||| Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || ||||| || || | || || ||| || | ||||| ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || || || | ||||| || || |||||||| || || |||| ||| | || Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || |||||||||||||| |||||||| || || ||| | ||||| ||||| || Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || || |||||||| ||||| |||||| |||| || ||| || | | Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 706 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | ||||||| ||||||||||| |||||||| Sbjct 705 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 646 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 || || || || |||||||| ||||| ||||| || ||||||||||||| ||| || Sbjct 645 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 586 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 |||||||| ||||| || || |||||| | ||||| |||||||| || || |||||||| Sbjct 585 TAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 526 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 ||| || | ||| || ||| ||||| ||||| || || |||||||| |||||||| || Sbjct 525 CACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 466 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | ||| |||| |||||||| | || || ||||| || || | ||||| ||| Sbjct 465 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 406 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||| || |||||||| || || ||||| Sbjct 405 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 346 Query 164771 TG 164772 || Sbjct 345 TG 344 Score = 562 bits (622), Expect = 3e-155 Identities = 728/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| |||||||| || || | || ||| Sbjct 32832 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTT 32891 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| |||| | || |||||| | || || || || || | || ||| Sbjct 32892 CCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 32951 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 ||||| || || ||||| ||||||||| |||| ||| ||||| | || || |||||| Sbjct 32952 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTT 33011 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 |||||||| || | | | | |||||| | | | || ||||||||||| || ||| Sbjct 33012 TCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAA 33071 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || | ||| ||||||| || |||||||| Sbjct 33072 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGA 33131 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTA-- 165563 ||||||| ||||| ||||| ||| | ||||| |||||| | || || ||| || Sbjct 33132 GCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGCA 33187 Query 165564 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 | || || || ||||| || || ||||||||||| || || ||||||||| || || Sbjct 33188 ATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATT 33247 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 || || || || || ||||| || ||||||| || || || ||| || || ||||| Sbjct 33248 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGC 33307 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || || | ||| | ||||| | |||||||| ||||| ||||| |||| || ||||| Sbjct 33308 TATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCA 33367 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 ||||||||| ||||| ||| | |||| | ||| |||| | || || ||||||| ||| Sbjct 33368 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 33427 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 ||||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | Sbjct 33428 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 33487 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 ||||||| |||||||| || || ||||| || || ||||| || ||||| || || || Sbjct 33488 AACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTT 33547 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 33548 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 33607 Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041 ||| | |||| ||| | | || | ||||||| ||||| ||||| ||||| ||||| Sbjct 33608 CGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGA 33667 Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101 ||| || || || || ||| | ||||| ||||| || || ||||| || ||||| || || Sbjct 33668 CTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAA 33727 Query 166102 AAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGA 166161 ||| ||||| || |||||||| ||||||||||| |||| | ||||| || ||||| Sbjct 33728 AAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 33787 Query 166162 GAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| || | |||||||| || ||||| || | || ||||| || Sbjct 33788 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 134 bits (148), Expect = 2e-26 Identities = 265/391 (68%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 164251 TGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACA 164310 |||| || || || | ||| || || |||| ||| | || ||| |||| ||||| ||| Sbjct 4833161 TGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAGCATTACA 4833220 Query 164311 TCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCA 164370 |||| || |||| || || ||| | ||||| | || ||| | || | | || Sbjct 4833221 TCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAATGACTCCTTATCCA 4833280 Query 164371 GTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGT 164430 || ||||| |||| | |||| || ||| || | ||||||| ||| ||| | Sbjct 4833281 ATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAAAATGAAT 4833340 Query 164431 CCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTC 164490 || || | ||||||| ||||||||| | |||||||| || |||| || | |||| Sbjct 4833341 CCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTC 4833400 Query 164491 ACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 164550 | |||| ||||| | | ||||||| |||| ||| || |||| ||| | ||| || | Sbjct 4833401 ATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCATTCTTTAC 4833460 Query 164551 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCA 164610 | |||||| | | | | |||||| | | || ||||||||||| | ||||| || || Sbjct 4833461 ATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTACTTTTGGTATTAGCA 4833520 Query 164611 CGATGGCATTCAACCTGAACGGTTTCAACTT 164641 | ||| | |||| || || |||| |||| Sbjct 4833521 CTATGCCTCTCAATCTAAA--TTTTCTACTT 4833549 >seq1667 Length=4831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 165206 GATGACTGGCTTA--AACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||| ||| || | || ||||| |||||||| ||||||||||| || | || | Sbjct 2917 GATGACTGG-TTACGAAAG-GACCGTTTTGTTTTTGTGGGTTGGTCTGGTCTATTGCTCT 2974 Query 165264 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 165323 |||| ||| ||| |||| | || |||||| | || | | || || | || | Sbjct 2975 TTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTTGTAACCTCAT 3034 Query 165324 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAG 165383 ||||||| || || ||||| ||||||||| || | ||| ||||| | || || | || Sbjct 3035 GGTATACCCATGGATTGGCCAGTTCCTATTTGAAAGGTTGCAACTTCTTAACCGCTGTAG 3094 Query 165384 TTTCTACTCCAGC 165396 |||||||||| || Sbjct 3095 TTTCTACTCCTGC 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556907298638160