Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2514 533 2e-146 seq13 122 1e-22 >seq2514 Length=157033 Score = 533 bits (590), Expect = 2e-146 Identities = 710/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | |||||| |||| ||||| ||||| || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || || || || || || | |||||||| | || ||||| | ||||||||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||| || ||||| || |||| |||| || || || | ||||| |||||||| Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| || || |||||||| || | | | Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || |||||||| | |||||||| | | | | Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | || ||| | ||||| || ||| || ||||| |||||||||||||| Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || || ||||| ||| | |||||||| || ||||||||||| |||||||| || Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 732 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 673 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| || |||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 672 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 613 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||| |||||||| | | | || |||||| |||| Sbjct 612 CCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGC 553 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 552 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 493 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | || || || || || |||||||| || || ||| | | ||| | ||| ||| Sbjct 492 TCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 433 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 432 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 373 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| || ||||| |||||| |||| Sbjct 372 TCATAATTTCCCTCTAGACCTAGC 349 >seq13 Length=15658869 Score = 122 bits (134), Expect = 1e-22 Identities = 259/384 (67%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 168863 CCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTG-CAGCATTTGCAGTATTCCTTGT 168921 |||||||| |||||| |||||||| || | | || || | ||| || || | | Sbjct 4833067 CCTTGGATTGTTGTTGCATATTCAGCTCCTAT-TGTGACAACTATTGTTGTTTTTTTGAT 4833125 Query 168922 ATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATT 168981 |||| | | ||| | | ||| || ||||| ||||||||||||| | ||| || || Sbjct 4833126 TTACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTT 4833185 Query 168982 CAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGC 169041 ||||| ||| | |||||| |||| ||||| |||| ||||| | || || || ||| Sbjct 4833186 TAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTT 4833245 Query 169042 AGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAAC 169101 ||| ||| ||||| | | | || || ||| | | |||||||||| | ||||| Sbjct 4833246 AGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAAC 4833305 Query 169102 ATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGG 169161 ||| | | |||| || || | | | ||||| || | ||||||| || || Sbjct 4833306 CTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGG 4833365 Query 169162 TCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTT 169221 |||| | |||||||| ||| | || || | || ||||| | || || || ||||| Sbjct 4833366 TCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTT 4833425 Query 169222 CCAGTATGCAAGTTTCAACAACTC 169245 | | ||||| ||||| |||| ||| Sbjct 4833426 CTAATATGCTAGTTTTAACAGCTC 4833449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564423862422720