Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2514 497 1e-135 seq6 118 1e-21 seq18 104 3e-17 seq13 102 1e-16 seq1667 89.7 6e-13 >seq2514 Length=157033 Score = 497 bits (550), Expect = 1e-135 Identities = 703/988 (71%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | ||||| |||| ||||| ||||| | Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||| || ||| | || ||| | | || || | || |||||||| || ||| Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 1212 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || || || || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1211 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1152 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 ||||| |||||||| || |||| | || || ||||| | ||||| ||||| || Sbjct 1151 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 1092 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| |||| ||||||||||| ||||| || ||||||||| || | | | Sbjct 1091 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTT 1032 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | |||||||| | |||||||||| | | | Sbjct 1031 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGT 972 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| | || || |||| Sbjct 971 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCT 912 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | |||||| ||||||| || || || ||||| ||||| ||||| ||| Sbjct 911 GTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATC 852 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| || ||||||||| | || ||||| || ||||| ||||| || ||||| || Sbjct 851 TCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 792 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 791 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 732 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 ||||| || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 731 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 672 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| || || ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 671 TACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 612 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| ||| |||||||| | | | || |||||| |||| Sbjct 611 CGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCT 552 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 551 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAT 492 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || |||||||| ||||||||||| || || ||| | | ||| | || ||| Sbjct 491 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 432 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 431 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 372 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTG 172807 || || ||||| ||||||| ||| ||| Sbjct 371 CATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 367 bits (406), Expect = 2e-96 Identities = 704/1039 (68%), Gaps = 23/1039 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || || | | || ||||||||| ||| || ||||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| ||||| ||| Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | | || || ||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || | |||| ||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || |||| || ||||| |||||||| ||| | ||||| ||||| | || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 173311 CTTGTAGGCATCA-GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCAC 173369 || | || | ||||||| || ||| |||||||||||| | || || || || Sbjct 33180 TCCGT-GCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGT 33238 Query 173370 TAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGG 173429 | | || | || || |||||||| ||| |||||||||| || ||| || || Sbjct 33239 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33298 Query 173430 TGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 173489 || ||||| || ||||| | ||| | || | ||||| || || || ||| |||| Sbjct 33299 CGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAA 33358 Query 173490 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCA 173549 |||||||| |||||||| ||||| || || | || | || | ||||| || ||||| Sbjct 33359 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 33418 Query 173550 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGAT 173609 |||||| || || | || || || | ||||| || ||| ||| Sbjct 33419 TGGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT----- 33461 Query 173610 TCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 173669 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 33462 ----GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 33517 Query 173670 TACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTT 173729 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | || Sbjct 33518 CACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 33577 Query 173730 ACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGT 173789 ||| ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 33578 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 33637 Query 173790 AGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 173849 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| || Sbjct 33638 TGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 33697 Query 173850 AGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 173909 |||||| || || ||||||||||| || || ||||| ||| | |||||||| || | || Sbjct 33698 AGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGC 33757 Query 173910 ATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACC 173969 |||||| | || |||||| || ||||| ||| | |||| || || || || |||| Sbjct 33758 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 33817 Query 173970 AAGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 33818 CCGTGGAAACGCTCTTTAA 33836 >seq6 Length=26894541 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| |||||| || ||||| || || |||||||||||||||||||| ||| Sbjct 23160511 GAGAATCCGGCTTGGTATACCCAGTACACACCGTACCAAGCTGAGATATCTCAGGGTAGA 23160570 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 ||||| |||| ||||||||||||| | ||||| || || || ||| | || || || Sbjct 23160571 TTGGAGTCTTTGCTCAATTACCAAACCATGATCACGGATCTTACTGGATTGCCTATGTCA 23160630 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||||| ||||| || ||||| |||||| Sbjct 23160631 AATGCTTCATTGCTTGATGAAGGGACTGCTGCTGCAGAGGCAATG 23160675 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 12/211 (6%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| |||| ||||| || || |||||||||||||| || || ||||| || Sbjct 23161012 CAGAGGTTTGGTGTTCCAATGGGGTATGGTGGTCCTCATGCTGCGTTTTTGGCAACCTCA 23161071 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||| ||||| | ||| ||||| |||||| | | || ||| || ||| || Sbjct 23161072 CAAGAGTACAAGAGGATGATGCCTGGTAGAATTATTGGTGTTAGT--GTTGATTCTTCAG 23161129 Query 158561 GTAATAAAGCATAC----AGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGAC 158616 | ||||| | | | | || | || ||||| ||||||||||| | || ||| Sbjct 23161130 G----AAAGCCTGCTCTGCGCATGGCGATGCAAACTAGGGAGCAGCATATTCGCAGGGAC 23161185 Query 158617 AAAGCAACCAGTAACATCTGCACAGCACAAG 158647 || || ||||| |||||||| || || |||| Sbjct 23161186 AAGGCTACCAGCAACATCTGTACTGCTCAAG 23161216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || || ||||| || ||||| ||||||||||| Sbjct 23164056 TGGAGCTGATGTTTGCCATCTCAATCTCCACAAAACATTTTGCATTCCGCATGGAGGTGG 23164115 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 23164116 TGGTCCTGGCATGGGTCCTATTGGTGT 23164142 >seq18 Length=14966190 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| |||||| || ||||| | || |||||||||||||||||||| ||| Sbjct 4654040 GAGAATCCAGCTTGGTATACGCAATACACACG-TACCAAGCTGAGATATCTCAGGGTAGA 4653982 Query 157999 TTGGAAGCTTTATTCAATTACC-AAACGCTCATCACAGAACTCACAGGACTACCGATAGC 158057 ||||| |||| ||||||||| |||| | || || || || || ||| | || || | Sbjct 4653981 TTGGAGTCTTTGCTCAATTACCAAAACCATGATTACGGATCTTACTGGATTGCCTATGTC 4653922 Query 158058 AAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||| || | | ||||||| ||||| || ||||| |||||| Sbjct 4653921 AAACGCTTCATTGCTTGATGAAGGGACTGCTGCTGCAGAGGCAATG 4653876 >seq13 Length=15658869 Score = 102 bits (112), Expect = 1e-16 Identities = 319/489 (65%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 172192 CCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTG 172251 || ||||| ||| ||||||||||| ||| | || | ||| ||| || | | Sbjct 4833067 CCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGACAACTATTGTTGTTTTTTTGATT 4833126 Query 172252 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 172311 || | | | ||| | | || || ||||| |||| ||||| || | ||||| || Sbjct 4833127 TACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTT 4833186 Query 172312 AACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCA 172371 ||||||||| | || ||| |||| |||||| |||| || || | || || |||||| | Sbjct 4833187 AACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTA 4833246 Query 172372 GGAGTAGCAGGAATGTTTGGA--GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTA 172429 || ||| |||| | | || | | || |||| | | ||||| |||| ||| || | Sbjct 4833247 GGCGTAACAGG--TTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAA 4833304 Query 172430 CATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCG 172489 | ||| | | |||| || || | || ||||| || | || |||| || | Sbjct 4833305 CCTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTG 4833364 Query 172490 GACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCT 172549 | ||| | |||||||| || |||| |||| || || |||| ||||| | | |||| Sbjct 4833365 GTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCT 4833424 Query 172550 TCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTAGCAGTTTTCCC 172607 || | |||||| ||| |||| ||| | |||| || |||||| ||| || || Sbjct 4833425 TCTAATATGCTAGTTTTAACAGCTC--TCATTCTTTACATTTCTTCTTAGGTTCTTGGCC 4833482 Query 172608 TGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 172667 | | || || | ||||| || || | ||||| | || ||| | |||| || || Sbjct 4833483 TATAATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAA--T 4833540 Query 172668 TTTCAACTT 172676 |||| |||| Sbjct 4833541 TTTCTACTT 4833549 >seq1667 Length=4831 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| | || ||||| || || | || ||||||||| Sbjct 2905 TTTGATATTATGGATGACTGGTTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGGT 2964 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||| ||| || || | | || ||||||||| || | ||||| Sbjct 2965 CTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTT 3024 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | |||| ||||| ||| Sbjct 3025 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGAAAGGTTGCAACTTCTTA 3084 Query 173131 ACAGCAGCAGTCTCCACACCTG 173152 || || | ||| || || |||| Sbjct 3085 ACCGCTGTAGTTTCTACTCCTG 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032720491040