Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2514 585 3e-162 seq13 116 4e-21 seq19 104 3e-17 seq1667 82.4 9e-11 >seq2514 Length=157033 Score = 585 bits (648), Expect = 3e-162 Identities = 713/967 (74%), Gaps = 4/967 (0%) Strand=Plus/Minus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 ||||| || ||| | || ||||| || || |||||||||| ||| | ||| | ||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 162472 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 162530 ||||| || || |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 162531 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 162590 ||| || |||| || || | ||||| ||||| ||||| |||||||| || |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 162591 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 162650 ||| || || || | ||||| || || || |||||||| ||||| ||||||| || Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 162651 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGC 162710 | | || ||||| ||||||| | || | || | |||||| | | || | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-G 162769 |||||||| ||||| |||||||| || |||||| ||||||||||| ||||| ||| | Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 947 Query 162770 TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTC 162829 | ||||| || || |||||||| || || | || || ||| || | ||||| |||||| Sbjct 946 TTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTC 887 Query 162830 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTG 162889 |||| ||| || || | ||||| | || ||| |||||| || |||| ||| ||| Sbjct 886 AAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTG 827 Query 162890 TCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTG 162949 | ||||| || ||||||||||| || ||||| || || |||||||| || || || |||| Sbjct 826 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 767 Query 162950 TCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCC 163009 | ||||| || || || |||||||| ||||| ||||||||||| || ||| | || Sbjct 766 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCA 707 Query 163010 GTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 163069 | || || || |||| ||| || || | ||||||| || |||||||| ||||| | Sbjct 706 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 647 Query 163070 CATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCAT 163129 | || || ||||| || || |||||||| || || || ||||||||||||||||| | Sbjct 646 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 587 Query 163130 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGT 163189 | |||||||| ||||| || || |||||| | ||||| |||||||| || || ||||||| Sbjct 586 TTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 527 Query 163190 TCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 163249 |||| || | || | || ||||| ||||| || || |||||||| |||||||| | Sbjct 526 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAAT 467 Query 163250 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAG 163309 | | ||||| |||| |||||||| | || |||||||| || || | |||||||| Sbjct 466 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 407 Query 163310 GTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAG 163369 | ||||||||||||||||| || || |||||||| || ||||| || ||||| || | Sbjct 406 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTG 347 Query 163370 CTGCCGA 163376 ||| ||| Sbjct 346 CTGTCGA 340 Score = 517 bits (572), Expect = 1e-141 Identities = 732/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || |||||||| ||| | |||||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| ||||||||| |||| | ||||||| | || ||| || || | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCT-TTATTATTACTATGGGG 33058 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || | |||| |||||| Sbjct 33059 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGT 33118 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || ||||||||||| || | || || ||||| ||| | || ||||||||||||||||| Sbjct 33119 TGCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33178 Query 163980 CCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 | || ||| | |||| || ||||| || || ||||||||||| ||||| || || | Sbjct 33179 A-TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTG 33237 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||| || || || || || || ||||| || |||||||||| || || ||||| Sbjct 33238 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 33297 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || ||||| || || ||||| || | || | |||||||||||||| ||||| ||| Sbjct 33298 GCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGA 33357 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || ||||||||||||||||| ||| || | |||| || |||||| ||||||| Sbjct 33358 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTC 33417 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 33418 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33477 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 33478 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGT 33537 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || || || || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 33538 CCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33597 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | |||| || ||||| || || | Sbjct 33598 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTAC 33657 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || ||| || || | ||||| ||||||||||| || ||||||| Sbjct 33658 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 33717 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 |||||||||| || || | || || ||||| | ||||| ||| | || | || | Sbjct 33718 TCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATC 33777 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 33778 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTA 33835 Query 164637 AT 164638 || Sbjct 33836 AT 33837 >seq13 Length=15658869 Score = 116 bits (128), Expect = 4e-21 Identities = 222/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 |||||| || |||| ||| |||| ||| |||| ||||| |||| || || | || || Sbjct 4833177 TGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATT 4833236 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 |||||||| || || ||||| | | | || || | | || || ||||| |||| Sbjct 4833237 TCACATGTTAGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTT 4833296 Query 162987 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 163046 |||||| || ||| | || || || | ||| ||| || || | ||||| Sbjct 4833297 TTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTA 4833356 Query 163047 CAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCG 163106 || || |||||| | ||||| || || ||||||| | || ||||||| || || | Sbjct 4833357 CAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTG 4833416 Query 163107 TTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 163166 ||||||| ||||||| || |||| ||| | ||| || || |||||| | | | | Sbjct 4833417 ACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTC 4833476 Query 163167 ATGGCCTGTTGTCGGCATCTGGTTCAC 163193 |||||| | | || ||||||||||| Sbjct 4833477 TTGGCCTATAATAGGTATCTGGTTCAC 4833503 >seq19 Length=16008726 Score = 104 bits (114), Expect = 3e-17 Identities = 105/135 (78%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 164120 TCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAG 164179 ||||||| |||| ||||||||||||| ||||| ||||| | || ||||||| ||||| Sbjct 8026075 TCCTCTTTTTCC---AAGGATTTCATAATTGGACACTGAACGCATTTCATATGACGGGAG 8026019 Query 164180 TTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATA 164239 |||| ||| || | |||| || || ||| ||||||||| || | || || ||||||| Sbjct 8026018 TTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATA 8025959 Query 164240 CATTGTATGAAGATG 164254 | || | |||||||| Sbjct 8025958 CTTTAT-TGAAGATG 8025945 >seq1667 Length=4831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | ||||||||||| ||| | || ||||| || ||| | ||||||||||| Sbjct 2905 TTTGATATTATGGATGACTGG-TTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGG 2963 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 || | || |||| ||| ||| | || | || || ||| | || | || ||| || Sbjct 2964 TCTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTT 3023 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTG--AGGGTGCTAATTTT 163797 || || || ||||| ||||||||| |||| | ||||||| ||| ||| ||| || || Sbjct 3024 TGTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGC-AACTTC 3081 Query 163798 CTCACAGCGGCTGTGTCAACGCCTGCT 163824 | || || | || || || |||||| Sbjct 3082 TTAACCGCTGTAGTTTCTACTCCTGCT 3108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557566477922800