Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2514 618 5e-172 seq13 136 4e-27 seq19 114 1e-20 seq1667 84.2 2e-11 >seq2514 Length=157033 Score = 618 bits (684), Expect = 5e-172 Identities = 727/990 (73%), Gaps = 2/990 (0%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| || ||||| | ||||||||| | |||||||| ||| | || ||||| || ||| | Sbjct 1332 CTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTT 1273 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||| ||||| || | | ||||| ||||| || || ||||| ||| | | ||| | Sbjct 1272 GATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 1214 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || ||||| |||||||| || ||||| ||| |||| || || | ||||| |||| Sbjct 1213 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1154 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | ||||| |||||||| || ||||| ||||| ||||| || | ||||| || || | Sbjct 1153 ATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAA 1094 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| || | || || ||||| ||||| || ||||||| | || | | Sbjct 1093 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | |||||| | |||| | | || ||||| |||||||||||||| || || Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 |||| ||||||||||| ||||| ||||||||| || ||||| || || || || ||| Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||| ||| | | ||||| |||||||||| ||| || || | ||||||||| || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 |||||||||| || |||| ||| |||| ||||| || |||||||||||||| ||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | || || ||| | ||||| ||||| ||||||||||| || || |||||||| ||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 ||||| |||| |||||| || | | |||||||| |||| ||| || || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||||| || ||||| || ||||| || ||||| ||||| || ||||||||||| || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 | || ||||||||||||| || || |||||||| || || | || |||||||| | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || |||||||| || |||||||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985 | || || |||||||| |||||||| ||| | |||||||| ||| || | || Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045 | ||||| || | | ||||||||| || ||||||||||||||||| || ||||||| Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 168046 CTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||| || |||||||| ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 585 bits (648), Expect = 3e-162 Identities = 733/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| |||||||| || || | || ||| Sbjct 32832 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTT 32891 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| |||| | || |||||| | || || || | || || || ||| Sbjct 32892 CCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 32951 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| || || ||||| ||||||||| |||| || ||||| | || || |||||| Sbjct 32952 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTT 33011 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | |||||| | | | || ||||||||||| |||||| Sbjct 33012 TCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAA 33071 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || | ||| ||||||| || |||||||| Sbjct 33072 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGA 33131 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 168852 ||||||| ||||| ||||| ||| | ||||| |||||||| || || ||| || Sbjct 33132 GCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGCA 33187 Query 168853 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | || || || ||||| || || ||||||||||| || || ||||||||| || || Sbjct 33188 ATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATT 33247 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 || || || || || ||||| || ||||||| || || || ||| || || |||| Sbjct 33248 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGC 33307 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || || |||||| | ||||| | |||||||| ||||| ||||||||||| |||||||| Sbjct 33308 TATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCA 33367 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| || || ||| | ||||| | || |||| | || |||||||||| ||| Sbjct 33368 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 33427 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| |||||| | | | |||||||||| |||||||| ||| || ||| || Sbjct 33428 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 33487 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 ||||| | || || || ||||| ||||| || || ||||| || ||||| || || || Sbjct 33488 AACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTT 33547 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 ||| |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 33548 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 33607 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | | || | ||||||| ||||| ||||| ||||| ||||| Sbjct 33608 CGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGA 33667 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||| ||||| || || ||| | ||||| |||||||| || |||||||| ||||| ||||| Sbjct 33668 CTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAA 33727 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || || || || || ||||| ||||||| ||| | || || ||||| |||||||| Sbjct 33728 AAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 33787 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| || | ||||||||||| || || ||||| || || || || Sbjct 33788 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 136 bits (150), Expect = 4e-27 Identities = 242/353 (69%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 167540 TTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCA 167599 ||| || || | | ||||||| || || | |||||| || |||| ||| |||| ||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 167600 AGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGG 167659 ||| ||||| ||||||| || |||| || || ||| | ||||| | || ||| | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 167660 CGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAAC 167719 | || | | || || ||||| |||| | |||| |||||| || | ||||| Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 167720 CACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAA 167779 || ||| ||| ||| || | ||||||| || ||||| | ||||| || ||| | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 167780 CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAA 167839 |||||| | ||||||||||| || || | | ||||||| |||| || || |||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 167840 CTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 ||| | || | || |||||||| | | |||||| | | |||||||||| Sbjct 4833447 CTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGT 4833499 >seq19 Length=16008726 Score = 114 bits (126), Expect = 1e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 168968 AGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATT 169027 ||| || || ||||| | ||||| | |||||||| ||||| ||||||||||| |||| Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 169028 TCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGT 169087 |||||||| ||| || || ||| | ||||| | || || | | ||| |||||||||| Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 169088 TACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATAC 169132 ||| ||||| |||||| | | | |||||| ||| |||||||| Sbjct 8025972 TACTGTAGAAAATACTTTAT-TGAAGATGATGATGGTGCAAATAC 8025929 >seq1667 Length=4831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | | ||| ||||| |||||||| ||||||||||| || | || ||| Sbjct 2917 GATGACTGGTTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGGTCTATTGCTCTTT 2976 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| |||| | || |||||| | || | | | || || || ||| Sbjct 2977 CCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTTGTAACCTCATGG 3036 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| || || ||||| ||||||||| || | || ||||| | || || | |||| Sbjct 3037 TATACCCATGGATTGGCCAGTTCCTATTTGAAAGGTTGCAACTTCTTAACCGCTGTAGTT 3096 Query 168675 AGTACTCCAGC 168685 |||||| || Sbjct 3097 TCTACTCCTGC 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560590382893600