Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2514 672 0.0 seq13 132 5e-26 seq19 100 3e-16 >seq2514 Length=157033 Score = 672 bits (744), Expect = 0.0 Identities = 730/966 (76%), Gaps = 2/966 (0%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 |||||||||||| | || ||||| |||||| | ||||| || ||| | |||| || Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| || ||||| ||||| || || || |||||||||||||||||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | || || ||||| ||||| |||||||| | |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | ||||| || || || |||||||| ||| || | |||||||| Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| |||||||| |||||||| || | |||| | |||||| | | ||||||||||| Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 |||||||| |||||||||||||| || ||| || |||||||||||||||||| || Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || ||||| || || ||| | || |||||| || | ||||| ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| ||||| || ||||| |||||||| || ||||||||||||||||||| |||| | || Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || || || ||||| |||||||| || || |||||| | ||||| ||||| || Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCG 165389 |||||| || || || ||| |||||||||||| | | || || || | || | Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 706 Query 165390 CGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGAC 165449 || || || |||| || | || | ||||| | ||||| ||||| ||||| || Sbjct 705 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 646 Query 165450 CTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTT 165509 ||||| ||||| || || || || || || || || | || |||||||| || || Sbjct 645 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 586 Query 165510 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTT 165569 ||||| || ||||| | || |||||| | || || ||||||||||| ||||||||||| Sbjct 585 TAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 526 Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 ||||||| | ||| ||||||| ||||| ||||| || || |||||||| |||||||| || Sbjct 525 CACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 466 Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689 | | ||||||||||| | || ||| |||||||| || | ||||||||| Sbjct 465 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 406 Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || |||||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 405 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 346 Query 165750 TGCCGA 165755 || ||| Sbjct 345 TGTCGA 340 Score = 589 bits (652), Expect = 2e-163 Identities = 725/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| |||| Sbjct 32850 GACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 32909 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| |||||| | || Sbjct 32910 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCC 32969 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| |||| ||| ||||| | || || |||||||||||||| || || | Sbjct 32970 AGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATAGT 33029 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| || | | || ||||||||||| || ||||| ||||| | ||| Sbjct 33030 TTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 33089 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || | ||| | ||||||||||||||||| ||||| | ||||| ||| Sbjct 33090 TGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCGGACTAATAGGT 33149 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATT-CGTCCGTACAATGCAAT 166549 || ||| | || || |||||| | ||||| || | ||| || || || |||||||| Sbjct 33150 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGT-GCAATTACGACCTTATAATGCAAT 33208 Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609 ||| || |||||||| ||||| || || ||| ||| || || || || || || ||||| Sbjct 33209 CGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCA 33268 Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669 || ||||||| || || || ||| || || |||| || || |||||| |||| || Sbjct 33269 GTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTT 33328 Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729 | |||||||| || || ||||||||||||||||||||||||||||| || || ||| | Sbjct 33329 TTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGT 33388 Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789 | || | ||| |||| | || || ||||||| ||| ||||| || ||| | | | | Sbjct 33389 ATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 33448 Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849 ||||||||| |||||||| ||| || || || | ||||||| |||||||| || Sbjct 33449 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTA 33508 Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 ||| ||||| || || ||||||| |||||| || || || || |||| ||| ||||| Sbjct 33509 TTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAA 33568 Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 33569 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 33628 Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 || | ||||||| ||||| ||||| ||||| |||||||| ||||| || ||| | | Sbjct 33629 TGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCG 33688 Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089 ||||| || |||||||| ||||| || ||||||||||| || ||||| || ||||| || Sbjct 33689 TGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAATGAAGG 33748 Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149 || ||| |||||||||| || ||||| |||||||| | | |||||||||| || Sbjct 33749 CATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 33808 Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||| || | || |||||||| ||| Sbjct 33809 GGTTCTACCCCGTGGAAACGCTCTTTAA 33836 >seq13 Length=15658869 Score = 132 bits (146), Expect = 5e-26 Identities = 284/418 (68%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 165205 GGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 165264 ||| ||| ||||| || ||||| ||||||| || || | |||||||||||||| |||| Sbjct 4833136 GGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATG 4833195 Query 165265 TTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 165324 | || ||| |||| || ||| |||| ||||| | || || |||||| | ||||| | Sbjct 4833196 ATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACA 4833255 Query 165325 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTC 165384 || ||| | || || | | | || ||||||||| | | || || | || | | Sbjct 4833256 GGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCT-CTAATTT 4833314 Query 165385 G-TCCGCGAGACAACTGAAACAGAGAGTCA-GAACTACGGTTATAAGTTTGGACAAGAAG 165442 | || || || | ||| || | || || | ||||| | ||||| ||| | | Sbjct 4833315 GATCAAGGAAACCAAATAAAATGA-ATCCACTAATGAAGGTTACAGATTTGGTCAAAAGG 4833373 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 |||| || ||| ||||||| | ||| || || | || || | | || ||| |||| | Sbjct 4833374 AAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATG 4833433 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | || |||| || | ||| | || |||||| | | | |||||| || | |||| Sbjct 4833434 CTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTA 4833493 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTT 165620 ||||||||||| || ||||| ||||||| ||| | |||| || || |||| |||| Sbjct 4833494 TCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAA--TTTTCTACTT 4833549 >seq19 Length=16008726 Score = 100 bits (110), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 166646 AGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATT 166705 ||| || || ||||| |||| || | |||||||| || || |||||||||||| |||| Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 166706 TCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGT 166765 |||||||| ||| || || ||| | | || | ||| || | | ||| || ||||||| Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 166766 TACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATAC 166810 ||| ||||| || ||| | | | |||||| ||| |||||||| Sbjct 8025972 TACTGTAGAAAATACTTTAT-TGAAGATGATGATGGTGCAAATAC 8025929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563643086959360