Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2514 553 2e-152 >seq2514 Length=157033 Score = 553 bits (612), Expect = 2e-152 Identities = 705/971 (73%), Gaps = 0/971 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | ||| |||| ||||| ||||| |||||||| | Sbjct 1324 ATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTC 1265 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| | |||||||| || || || || || | Sbjct 1264 CTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAG 1205 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 |||| ||||| || | |||||||| | || || | | ||||| ||||| ||||| | Sbjct 1204 ACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 1145 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||||| || |||| |||| || || || | ||||| || || || ||||||| Sbjct 1144 CTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAG 1085 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||| ||||| || ||||| ||||||||| | || || | | |||| Sbjct 1084 CGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACT 1025 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || |||||||| | |||||||||| | |||| | |||| Sbjct 1024 TCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 965 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 ||||||||||||| ||| |||||||| ||||| || | || || ||||| |||| Sbjct 964 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCT 905 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | ||||| ||||||| ||| ||| || || || ||||||||||| ||||| |||| Sbjct 904 TGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTA 845 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 | |||||||| ||| | |||||||| || ||||||||||| |||||||||||||| || | Sbjct 844 CTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACA 785 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || |||||| | ||||| || | || ||| || ||||| ||||| | | Sbjct 784 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGG 725 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | ||||| || || ||||| || || || || | || |||| || Sbjct 724 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 665 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 | || ||||| |||||||| || || || || || || ||||| || ||||| || | | Sbjct 664 TTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGA 605 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||||||||||||||| |||||||| |||| | | || |||||| | ||| | | | Sbjct 604 TCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGC 545 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 |||||||| | |||||||| ||| | | |||||| |||| ||||| || || || |||| Sbjct 544 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATG 485 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | || || |||||||| || | || ||| | ||| ||| || ||| ||||| | Sbjct 484 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTG 425 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| | || ||||| ||||||||||| |||||||| |||||||| || || | Sbjct 424 ATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATT 365 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 364 TCCCTCTAGAC 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582829684001600