Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2514 639 2e-178 seq13 134 2e-26 >seq2514 Length=157033 Score = 639 bits (708), Expect = 2e-178 Identities = 727/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 361 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 420 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 421 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 480 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| ||||| || ||||| ||||||| ||| | ||||| ||||| || || || Sbjct 481 AAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 540 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| || || | ||||||| ||||| || |||||| ||| Sbjct 541 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 600 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| || |||||| Sbjct 601 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGA 660 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 661 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 720 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 721 GTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 780 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| ||| |||| Sbjct 781 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTA 840 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| ||||| || ||| ||||| |||| ||||| Sbjct 841 AAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGACCGATTGGATAA 900 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| ||||| ||||| ||||| || || |||||| ||||| ||| Sbjct 901 ATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 960 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||| ||||||||| | | |||||| Sbjct 961 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGT 1020 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || || || |||| |||||| || | | Sbjct 1021 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGAT 1080 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | || ||||| ||| | |||| | |||| Sbjct 1081 GCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCA 1140 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||||||||| |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 1141 CCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 1200 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 || || ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1201 ATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1259 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| |||||||| | | |||||||| |||| ||| | |||||| | |||| ||| | Sbjct 1260 AGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGTGCTGGTTAT 1319 Query 84944 CCAATCACAGAAG 84956 ||||| ||||||| Sbjct 1320 CCAATTACAGAAG 1332 >seq13 Length=15658869 Score = 134 bits (148), Expect = 2e-26 Identities = 266/394 (68%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 84110 ATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGG 84169 ||| ||||| | | ||| ||||||| ||| | || || ||||| || || | | || Sbjct 4833540 ATTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATACCTATTATAGG 4833481 Query 84170 CCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGAT 84229 ||||| | | ||||| || || | |||| || |||| || |||||| | |||||| Sbjct 4833480 CCAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGCATATTAGAAGAT 4833421 Query 84230 AAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAA 84289 | | || || | || |||||| | || || | ||||||||| || | |||||| || Sbjct 4833420 CGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTCCTTTTGACCAAA 4833361 Query 84290 CTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGAC 84349 ||||||| | || || |||||| | | ||||| ||| | | ||| || || Sbjct 4833360 TCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCAAATTAGAGGTTAC 4833301 Query 84350 AAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACAT 84409 | |||||||||| || | ||| | || | ||| ||| | || || ||||| Sbjct 4833300 CAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTGTTACGCCTAACAT 4833241 Query 84410 GTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGT 84469 |||||| || | |||||||||| ||| || || | ||| |||| ||| |||| || || Sbjct 4833240 GTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCATAAAGTTAAAAGT 4833181 Query 84470 TCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 || | || || || |||| ||||| || ||| Sbjct 4833180 ACCAAATATTCCTAGAGGCACCCCATCTGAAAAA 4833147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255647727120