Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 132 5e-26 seq7 118 1e-21 seq5 114 1e-20 seq8 91.5 2e-13 seq10 82.4 9e-11 >seq17 Length=14661173 Score = 132 bits (146), Expect = 5e-26 Identities = 235/342 (69%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || || ||||||||||| || || || |||| ||||| || || ||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||||| || | ||||||||||| ||||| | | ||| || || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||||||||||||| || || | |||| || | | | Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACT---CTCGCTCCCGTCA 8256508 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| |||||||| ||||| |||| || || |||| || | Sbjct 8256507 ATCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGA 8256448 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || ||| | ||| || | ||| || | ||| | || | || | ||||||||| Sbjct 8256447 AACAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATC 8256388 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 ||||| || ||||| || || || ||||| |||||||||||| Sbjct 8256387 TCTGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAA 8256346 >seq7 Length=15101417 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || | |||||||| ||||| ||| Sbjct 5425449 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 5425508 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||||||||||||| | || | || || || || Sbjct 5425509 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 5425568 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | ||||||| || | |||||||| ||| Sbjct 5425569 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 5425628 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 5425629 CCTTCAATACTATCATCTTTCAT 5425651 >seq5 Length=25802683 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || || |||||||| ||||| ||| Sbjct 6278371 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCCA 6278430 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| | || | || || || Sbjct 6278431 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 6278490 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| |||| || | ||||||| || | |||||||| ||| Sbjct 6278491 ACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 6278550 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 6278551 CCTTCAATACTATCATCTTTCAT 6278573 Score = 102 bits (112), Expect = 9e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| ||||| | |||| | ||| || || |||||| Sbjct 20777744 CCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACCA 20777685 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| || ||| ||| ||||| || | || |||||| || | | Sbjct 20777684 TTGGAAGTACCATTTGTCCCCCGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGCA 20777625 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 ||||| || || || || | ||| || | ||||||| || || |||||||| || Sbjct 20777624 ATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATATG 20777565 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| || || |||||| |||| | ||||| ||||| Sbjct 20777564 CCTTCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 20777524 >seq8 Length=18835763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || |||||||||||| ||| | |||||| || ||||| ||| Sbjct 14364033 CAAGCAAAGTCACAATGCAGCCCCTCGTCTCTAGATATTAGTTCATTCGAGAATGTCAAA 14363974 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||| ||||| ||||| | |||||| || Sbjct 14363973 CCTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAAT 14363939 >seq10 Length=21538349 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||||||||| ||||| |||||| ||| | ||| || || ||||| ||| Sbjct 3696989 CAAGCAAAGTCACAATGTAGCCCCTCATCTCTAGATATTAGTTCGTTCGAGAATGTCAAA 3696930 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 | ||||||| ||||| ||||| | |||||| || Sbjct 3696929 ACTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAAT 3696895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091135730960