Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2514 491 1e-134 seq13 102 2e-17 >seq2514 Length=157033 Score = 491 bits (544), Expect = 1e-134 Identities = 703/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| ||| | |||||||| || || | Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || ||| | | || ||| | ||| ||||| | || ||||| || || || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || ||||| || ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || |||||||| || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 26041 CTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 |||||||| |||| | | || || ||| ||||||| ||||| || ||| | || ||| Sbjct 1092 ATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| || ||| | |||||||||| || | Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| |||||||||| |||| || | | || ||| | Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| ||||||| |||| ||||| |||||| ||||| |||||||| || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||||||||||||||||||||||| | |||||||| || || || || || || ||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| || || ||||| || ||||| || | || ||| ||||||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | |||||| || || | || ||||| ||||| | | || ||| | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | ||||| ||||| ||||| || |||||||| || || || || || || |||| Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | |||| || || || ||||| |||||||| ||| |||||| | |||||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| || || || || ||| | || || | ||||| |||| ||||| || | Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 | ||||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||| Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 ||||||| || || || ||| |||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGC 349 >seq13 Length=15658869 Score = 102 bits (112), Expect = 2e-17 Identities = 317/487 (65%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 26174 CCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTT 26233 || ||||| ||||||||||| |||| || | || || | | || || || || Sbjct 4833067 CCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGACAACTATTGTTGTTTTTTTGATT 4833126 Query 26234 TATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTT 26293 || | | || ||| |||||| ||||| ||||||| || || | |||||||||| Sbjct 4833127 TACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTT 4833186 Query 26294 AACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCT 26353 ||||||||| | |||||| |||| || ||| | || || || ||||||| || ||| Sbjct 4833187 AACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTA 4833246 Query 26354 GGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACT 26413 || || | || | | | || | | | | || |||||| || |||||| || Sbjct 4833247 GGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACC 4833306 Query 26414 TCCTCACTT-ATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGG 26472 | || | || || ||||| | | | | | || ||| | || || | ||||| Sbjct 4833307 T-CTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGG 4833365 Query 26473 GCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTT 26532 ||| | ||||| || ||| | || || | ||| || || | ||||| || || || Sbjct 4833366 TCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTT 4833425 Query 26533 TCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGT 26592 | ||||| |||||||| | | | |||| | |||||||| | | | ||||||| | Sbjct 4833426 CTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTAT 4833485 Query 26593 TGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTT 26652 | || || ||| | || || | ||||| |||| ||| | | || |||||| ||| Sbjct 4833486 AATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAAT--TTT 4833543 Query 26653 TAACTTT 26659 ||||| Sbjct 4833544 CTACTTT 4833550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146722019666736