Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq2514 515 1e-141
>seq2514
Length=157033
Score = 515 bits (570), Expect = 1e-141
Identities = 707/988 (72%), Gaps = 0/988 (0%)
Strand=Plus/Plus
Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027
|||| |||||||| || ||||| || || || ||||| ||||||||||||||||| || |
Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403
Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087
|| |||||||||| ||| |||||||| || | || | || | |||||| |
Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463
Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147
| || || ||||| || || || || ||||| |||||||||||| | || | ||| |
Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523
Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207
| | ||| || | || ||||||||||| | ||||||||||||| || || |
Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583
Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267
|||| |||||||| |||||||| | || ||||| || |||||||| || || || ||||
Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643
Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327
| || ||||| ||||| || ||| | || || | || ||||||| | || ||||
Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703
Query 36328 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387
| | || | || || || | | || ||||||||| ||||| | || ||||
Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763
Query 36388 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 36447
|||| || || || || | ||| || || || ||||||||||| ||||| || ||||| |
Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823
Query 36448 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 36507
| |||| |||||| || ||||| || || || || |||||||| ||||| || ||||| |
Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883
Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567
|||| || | || || | ||||| |||||| || || |||||||| |||||||| |
Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 943
Query 36568 CTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 36627
| ||| ||||| || | |||||| || | ||||||||||||| | || |||| ||
Sbjct 944 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGT 1003
Query 36628 AAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 36687
|| | | ||||| | ||||| | ||||| || | ||| || || ||||| ||||
Sbjct 1004 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 1063
Query 36688 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCG 36747
|||| || || | || ||| |||||||| |||||||| ||||| | || || || |
Sbjct 1064 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 1123
Query 36748 ATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 36807
| | || | || || ||||| ||||| ||||||||||| |||| | ||| || ||||
Sbjct 1124 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1183
Query 36808 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 36867
| |||||||||||||| || || || ||||| ||||||| || || || | |||| | |
Sbjct 1184 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 1243
Query 36868 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 36927
||| || || | | ||| ||||| | || |||||||| || | ||| || ||||
Sbjct 1244 AAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGT 1303
Query 36928 TGTTTGTACTTGTAACCCAGTCACATAA 36955
| | || || || | ||| | ||| ||
Sbjct 1304 TTTCAGTGCTGGTTATCCAATTACAGAA 1331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150449908371956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |