Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2514 571 2e-158 seq13 122 3e-23 >seq2514 Length=157033 Score = 571 bits (632), Expect = 2e-158 Identities = 724/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||||||| Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| |||||||| | | ||| ||||| || || | | ||| | ||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || ||||| |||||||||||| || || | || | Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | || || ||||||| ||| | ||||||||||||| ||| |||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 |||| |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | |||||||||||||| || ||| | || || | || ||| | | || |||| Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 | | || | ||| || || | | |||||||||||| ||| | | || |||| Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||| || || | |||||| || || ||||||||||| ||||| || ||||||| Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| | |||||||||||||||||||||||| || |||||||| ||||| ||||||| Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 | || |||| || || | || || || | |||| || || ||||| || ||||||||| Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTA-GCCGCCGCAACAGGAGCTGAATAT 942 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 943 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATG 1002 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 ||| || | ||||| | |||||| | || | || | || || || || ||||| Sbjct 1003 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTAT 1062 Query 5909 AGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | ||||||||| | ||| || |||||||| || || || ||||| ||||| || || Sbjct 1063 AACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCG 1120 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || ||||| ||||||||||| ||||||||||| | | Sbjct 1121 CAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAA 1180 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||||||| || || || ||||| ||||| || ||||| | ||| || | |||||| Sbjct 1181 CAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATA 1240 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || ||||||||||| || | ||| || | Sbjct 1241 CAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGAC 1300 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||| || | ||| | |||||| Sbjct 1301 GGTTTTCAGTGCTGGTTATCCAATTACAGAA 1331 >seq13 Length=15658869 Score = 122 bits (134), Expect = 3e-23 Identities = 315/475 (66%), Gaps = 4/475 (1%) Strand=Plus/Minus Query 5333 TTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGC 5392 || ||||| | || ||||||| || || | || || | ||| || | | | ||| Sbjct 4833539 TTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATACCTATTATAGGC 4833480 Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| | | | ||||||||||||| | | ||||||| |||||||| | |||||| Sbjct 4833479 CAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGCATATTAGAAGATC 4833420 Query 5453 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAAT 5512 ||| ||||| | |||||||| | || |||| ||| |||||||||| ||| || ||| Sbjct 4833419 GGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTCCTTTTGACCAAAT 4833360 Query 5513 TTATATCCATAGTTCTGAGAAGTAAGCCCAGTT-GTTTCACGAATGAGCGAAGAAGTAAC 5571 | || || | || | | | | | | || ||||| || | ||| || || Sbjct 4833359 CTGTAACCTTCATT-AGTGGATTCATTTTATTTGGTTTCCTTGATCAAATTAGAGGTTAC 4833301 Query 5572 AAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCAT 5631 | | ||||||||| || | | || | || | ||| || | || || | ||| Sbjct 4833300 CAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTGTTACGCCTAACAT 4833241 Query 5632 GTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGT 5691 ||| || || | |||||||| | || || || | |||||| | ||||||||||||||| Sbjct 4833240 GTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCATAAAGTTAAAAGT 4833181 Query 5692 ACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA 5751 |||| | || || ||||||| ||||| |||||| | | || | |||| | || Sbjct 4833180 ACCAAATATTCCTAGAGGCACCCCATCTGAAAAACTTTCTTAACCTATTAGGTAAATCAA 4833121 Query 5752 AAATAC-TGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGG 5805 ||| || | || | || ||| || ||||||||||| || |||||| || Sbjct 4833120 AAAAACAACAATA-GTTGTCACAATAGGAGCTGAATATGCAACAACAATCCAAGG 4833067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645042837004