Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2514 565 3e-156 seq13 125 8e-24 >seq2514 Length=157033 Score = 565 bits (626), Expect = 3e-156 Identities = 707/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| | || ||||| ||||| |||||||| ||| || | | || Sbjct 1308 TGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGC 1249 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || |||||||| || |||||||| || || |||||||| | Sbjct 1248 AACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCG 1189 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||||||| | || || || || ||||| ||||| ||||| |||||||| | |||| Sbjct 1188 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCC 1129 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| ||||| || | ||||| || || || |||||||| ||| | ||||||| Sbjct 1128 TACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGA 1069 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || || || || |||| | || | || | |||||| | | || | | Sbjct 1068 ATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 1009 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| || ||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 1008 TTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 949 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | || || ||||| |||||| | ||||| |||| Sbjct 948 TGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGG 889 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| || || | |||||||| || || |||||||||||||||| ||| | Sbjct 888 TCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGAT 829 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| || |||||||||||||| |||||||| || || ||| | || || || || Sbjct 828 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 769 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| || || || || ||||||||||| |||||| | || || ||| | | || Sbjct 768 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGAT 709 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||| ||||| || || | || || || | ||||| | || || ||||| ||||| Sbjct 708 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGA 649 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || || || || |||||||| || ||||| || ||||||||||| ||||| Sbjct 648 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 589 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| | || |||||| | ||||| | ||||| || | ||||| Sbjct 588 TTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTG 529 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| ||||| || || |||||||| |||||||| Sbjct 528 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCA 469 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| |||| || || ||| ||| ||||| ||||| ||||| | Sbjct 468 ATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCG 412 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| || ||||| || ||||| Sbjct 411 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 352 Query 163479 TGCTGCTG 163486 ||||||| Sbjct 351 AGCTGCTG 344 >seq13 Length=15658869 Score = 125 bits (138), Expect = 8e-24 Identities = 322/487 (66%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 162870 TCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTG-CAGCATTCGCTGTGTTCTTGG 162928 ||||||||| ||||||||| || || || | | || || | | | ||| || ||| Sbjct 4833066 TCCTTGGATTGTTGTTGCATATTCAGCTCCTAT-TGTGACAACTATTGTTGTTTTTTTGA 4833124 Query 162929 TCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTT 162988 | || | | ||| ||| ||| || || | ||||||| || || | |||||||| Sbjct 4833125 TTTACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTT 4833184 Query 162989 TTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGA 163048 |||||| ||| | || ||| |||| ||||| ||||||| || |||| || || ||| Sbjct 4833185 TTAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGT 4833244 Query 163049 TTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA 163108 | || || ||||| ||| | || || | | | || |||||| |||| | | || | Sbjct 4833245 TAGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAA 4833304 Query 163109 CTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCG 163168 | ||| | | |||| ||||| | | | || || || | ||||| | || | Sbjct 4833305 CCTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTG 4833364 Query 163169 GACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCT 163228 | ||| | ||||| ||||| |||| || | ||||||||| | ||||| | ||||| Sbjct 4833365 GTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCT 4833424 Query 163229 TCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288 || | ||||| ||| |||| ||| | ||| | || |||||| | | | | | ||| Sbjct 4833425 TCTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTA 4833484 Query 163289 TGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTT 163348 | | | |||||||||||| | | ||| | |||||| | |||| || || || Sbjct 4833485 TAATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAA--TTT 4833542 Query 163349 TCAACTT 163355 || |||| Sbjct 4833543 TCTACTT 4833549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553067419310160