Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 seq17 96.9 6e-15 >seq1 Length=48367220 Score = 102 bits (112), Expect = 2e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | |||||| || |||||||||||||||||||| || | ||||| Sbjct 31903439 GTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTC 31903498 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | || || |||||| | ||| | | || || | |||||| ||| || ||||| | Sbjct 31903499 CGAGACTTGGACTTCTTTCATGAAACGC-CCGGCGATATTCTCGAGGACGATTCCATCAG 31903557 Query 48543 AAGCAGCAAAGAAGGCAAGGACATG 48567 | || || |||||||||||||| || Sbjct 31903558 AGGCGGCGAAGAAGGCAAGGACGTG 31903582 >seq17 Length=14661173 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | |||||| || ||||||||||| ||||| || || | ||||| Sbjct 8256394 GTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTC 8256335 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | || || || ||| | ||| | | || || ||||| || ||| |||||||| | Sbjct 8256334 CGAGACTTGGACCTCTTTCATGAAACGC-CCGGCGAGATTTTCGAGGACAATCCCATCAG 8256276 Query 48543 AAGCAGCAAAGAAGGCAAGGACATG 48567 | || || ||||||||||||||||| Sbjct 8256275 AGGCGGCGAAGAAGGCAAGGACATG 8256251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503526581760