Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2514 612 2e-170 seq19 84.2 2e-11 >seq2514 Length=157033 Score = 612 bits (678), Expect = 2e-170 Identities = 709/953 (74%), Gaps = 2/953 (0%) Strand=Plus/Minus Query 8284 TATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTT 8342 ||| | || |||||||| ||| | ||||| || || || ||| |||| || | || Sbjct 1295 TATATTGGATGGTTTGGTGTTTTGATGATTCCTACT-TTATTGACCGCAACTTCTGTATT 1237 Query 8343 CATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGC 8402 |||| ||| ||| ||||||| ||||| || ||||| || || || || ||||| ||| | Sbjct 1236 TATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTC 1177 Query 8403 TGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGC 8462 ||||||||| | || || ||||| ||||| |||||||| || |||| | ||| || Sbjct 1176 TGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGC 1117 Query 8463 AATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAA 8522 || || | ||||| ||||| || |||||||| || || ||||||| ||| | ||||| Sbjct 1116 TATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAA 1057 Query 8523 CGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGG 8582 ||| |||||||| |||| | ||| | |||||| | ||||| || | ||| ||||| Sbjct 1056 CGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 997 Query 8583 TCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 8642 ||||| ||||||||| || ||| || || |||||||||||||| ||||||||| || Sbjct 996 GCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTC 937 Query 8643 TGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTT 8702 ||||||||||| || ||| ||||||| ||| | | ||||| | |||||||| || Sbjct 936 AGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTT 877 Query 8703 CTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGC 8762 || ||||| |||||||| || ||||| ||||| || |||| |||| |||| |||||||| Sbjct 876 TTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGC 817 Query 8763 TGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGG 8822 ||||||||||||||| |||||||| || |||||| | || || |||||||| |||||||| Sbjct 816 TGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGG 757 Query 8823 ATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCAC 8882 || || || || ||||||||||| | || || ||| || | | || ||||| Sbjct 756 CTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 697 Query 8883 CGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACAT 8942 |||| || ||| || | || |||| || |||||||| || |||||||| || || Sbjct 696 AGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATAT 637 Query 8943 TGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTC 9002 || ||||||||||| || ||||| || ||||||||||||||||| ||||||||| || Sbjct 636 CGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTC 577 Query 9003 TAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCT 9062 | | || ||||||||| | ||||| |||||||| || || |||||||| || || | Sbjct 576 TCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 517 Query 9063 CGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGA 9122 || | || ||||||||||| || ||||| ||||| |||||||| || | | || Sbjct 516 AGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 457 Query 9123 CGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTAT 9182 | ||||| || || | || |||||||| || | ||||||| || || ||||| Sbjct 456 TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTAT 397 Query 9183 GGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTG 9235 |||||| ||||| ||| | || || || || ||||| || ||||| || |||| Sbjct 396 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 574 bits (636), Expect = 5e-159 Identities = 726/998 (73%), Gaps = 0/998 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || ||||||||||||||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| || || ||| | || ||| || | || ||| || ||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 ||||| | || |||||||| || ||| || | || || | ||| ||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || ||||||||||| |||| |||| || ||||||||||| || ||||| || || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | | | | |||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 33180 TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTT 33239 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 ||| ||||| || |||||||| || |||||| |||||||||||||||| ||||| ||| Sbjct 33240 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGC 33299 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || || || || || ||| | ||||| |||| || |||||||||||||| || || Sbjct 33300 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAAC 33359 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || ||||||||||||||||| ||| || |||| | || || |||| || || || Sbjct 33360 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 33419 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||| || | | | ||||||| || ||||| || ||| ||| Sbjct 33420 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 33479 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || || ||||| || |||||| Sbjct 33480 TTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCC 33539 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||| Sbjct 33540 CAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 33599 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | || ||||| | ||||||| ||||| || || ||| Sbjct 33600 CCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGT 33659 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || ||||| || ||| | || | |||||||||||||||||||| ||| Sbjct 33660 GCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 33719 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 ||||| || ||||| ||| | || ||||| ||||||| |||||||| | || || Sbjct 33720 TATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAG 33779 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 33780 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 33817 >seq19 Length=16008726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 10313 TTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGA 10372 ||| | ||||| |||| || |||||||||||||| || || | || ||||||| |||| Sbjct 8026079 TTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATTTCATATGACGGGA 8026020 Query 10373 GTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAAC 10432 ||||| ||| || |||| | || || ||| || || || || | |||||||||| Sbjct 8026019 GTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAA-- 8025962 Query 10433 ACACTTTA-TCAAGATG 10448 | |||||| | |||||| Sbjct 8025961 ATACTTTATTGAAGATG 8025945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516463769616000