Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq1285 91.5 4e-14 >seq1285 Length=9516 Score = 91.5 bits (100), Expect = 4e-14 Identities = 231/349 (66%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 23235 GAGCAATGGATTTCAACGAAGCTTTTGACCGCCTGATAGGCCATGAAGGCGGTTATTCCA 23294 || ||||| ||| | ||||| |||||||| || | || || ||||| |||||||| Sbjct 603 GACCAATGACATTCGATGAAGCATTTGACCGGTTGCTTGGTCACGAAGGGCTTTATTCCA 544 Query 23295 ATCACCCTGACGACCCGGGCGGAGCAACCATGTGGGGCGTTACTGAAACGGTCGCAAGAT 23354 | | | | ||||||||||| | || ||||||||||| || | ||||| | Sbjct 543 ACAATTCGGCGGACCCGGGCGGCGAGACGATGTGGGGCGTCACGGCCCGTGTCGCGCGCG 484 Query 23355 CATGGGGCTATACCGGGGATATGCGCAGCCTCCCACGCGACACAGCCAAGGAGATTTACC 23414 | ||||| || || |||||| ||| || || || ||||||| || || | Sbjct 483 CCGATGGCTACCTGGGAGAGATGCGCGACCTGCCGCGTGATCGCGCCAAGGCCATCTATC 424 Query 23415 AGGCTCTGTACT-GGAGGCGCGTGCGAGCAGAGGAAATGCCTGATGCCATCCGGTTTGAT 23473 | |||||||| ||| || ||| || || | | ||||| || | || || || Sbjct 423 ACCGTCTGTACTGGGATGC-CGTCAAGGCCGACCAGTTACCTGACGCGGTGCGCTTCGAC 365 Query 23474 TTGTTCGACACGGCGGTGAATTCCGGTGTTGTGCAGGCCGTGAAGATCCTCCAGCGCGCA 23533 | |||||| || || || ||| |||||| || | ||| || |||||||| Sbjct 364 GTCTTCGACGGCGCCGTCAACAGCGGACCCGTGCAGTCCATCAAGTGGCTACAGCGCGCG 305 Query 23534 GCCGGCGTCACGGATGATGGCGTTATCGGGCCGAAGACCTTGGCCGCAG 23582 ||||||| ||||||| || | |||| || |||||| | ||||||| Sbjct 304 GCCGGCGCGGCGGATGACGGTATCTTCGGCCCCAAGACCATTGCCGCAG 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136479125464668