Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= NC_019923.1
Length=42689
Score E
Sequences producing significant alignments: (Bits) Value
seq1285 91.5 4e-14
>seq1285
Length=9516
Score = 91.5 bits (100), Expect = 4e-14
Identities = 231/349 (66%), Gaps = 2/349 (1%)
Strand=Plus/Minus
Query 23235 GAGCAATGGATTTCAACGAAGCTTTTGACCGCCTGATAGGCCATGAAGGCGGTTATTCCA 23294
|| ||||| ||| | ||||| |||||||| || | || || ||||| ||||||||
Sbjct 603 GACCAATGACATTCGATGAAGCATTTGACCGGTTGCTTGGTCACGAAGGGCTTTATTCCA 544
Query 23295 ATCACCCTGACGACCCGGGCGGAGCAACCATGTGGGGCGTTACTGAAACGGTCGCAAGAT 23354
| | | | ||||||||||| | || ||||||||||| || | ||||| |
Sbjct 543 ACAATTCGGCGGACCCGGGCGGCGAGACGATGTGGGGCGTCACGGCCCGTGTCGCGCGCG 484
Query 23355 CATGGGGCTATACCGGGGATATGCGCAGCCTCCCACGCGACACAGCCAAGGAGATTTACC 23414
| ||||| || || |||||| ||| || || || ||||||| || || |
Sbjct 483 CCGATGGCTACCTGGGAGAGATGCGCGACCTGCCGCGTGATCGCGCCAAGGCCATCTATC 424
Query 23415 AGGCTCTGTACT-GGAGGCGCGTGCGAGCAGAGGAAATGCCTGATGCCATCCGGTTTGAT 23473
| |||||||| ||| || ||| || || | | ||||| || | || || ||
Sbjct 423 ACCGTCTGTACTGGGATGC-CGTCAAGGCCGACCAGTTACCTGACGCGGTGCGCTTCGAC 365
Query 23474 TTGTTCGACACGGCGGTGAATTCCGGTGTTGTGCAGGCCGTGAAGATCCTCCAGCGCGCA 23533
| |||||| || || || ||| |||||| || | ||| || ||||||||
Sbjct 364 GTCTTCGACGGCGCCGTCAACAGCGGACCCGTGCAGTCCATCAAGTGGCTACAGCGCGCG 305
Query 23534 GCCGGCGTCACGGATGATGGCGTTATCGGGCCGAAGACCTTGGCCGCAG 23582
||||||| ||||||| || | |||| || |||||| | |||||||
Sbjct 304 GCCGGCGCGGCGGATGACGGTATCTTCGGCCCCAAGACCATTGCCGCAG 256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136479125464668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |