Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq6 95.1 1e-14 seq1 91.5 1e-13 >seq7 Length=15101417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || || ||||||||| || || || Sbjct 1458664 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGCTCT 1458605 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||||| ||||||||||| | ||| ||||||| Sbjct 1458604 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 1458545 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || | || ||| ||| |||| || || ||| Sbjct 1458544 CAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGGCGCACTCTGGCTGACTACAAC 1458485 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || |||||||| ||| |||| | | || || ||||| || Sbjct 1458484 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGGTAT 1458435 >seq6 Length=26894541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || || | ||| ||||| ||||| || |||||||| || || || |||||| Sbjct 10380743 GACAAGGAAGGGATTCCCCCGGATCAGCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAA 10380802 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || ||||||||||||||||| || ||||||||||| ||||| | Sbjct 10380803 GATGGGAGGACTCTTGCAGATTATAACATTCAAAAGGAGTCTACTCTGCATCTGGTACTG 10380862 Query 28767 AGATTACGAGGAGGGAT 28783 | || |||| ||||| Sbjct 10380863 CGTTTGAGAGGCGGGAT 10380879 >seq1 Length=48367220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||| ||||| | ||| ||| |||||||| || |||||||| ||||| Sbjct 25980244 AAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAACAGAGGCTCATCTTTGCTGGCAAG 25980185 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| |||||||| ||| | || || |||||||||||||| ||||| || || ||| Sbjct 25980184 CAACTGGAAGATGGACGCACTCTAGCTGACTATAACATTCAAAAGGAATCCACACTCCAC 25980125 Query 28758 ATGGT 28762 |||| Sbjct 25980124 CTGGT 25980120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425391765862806