Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2514 693 0.0 seq13 143 3e-29 seq1667 102 9e-17 seq8 86.0 7e-12 seq4 84.2 2e-11 >seq2514 Length=157033 Score = 693 bits (768), Expect = 0.0 Identities = 751/990 (76%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||| ||| | |||||||| || ||||| |||||| |||| ||||| || || || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 |||||||| | ||| | | | || || | ||| || || || || ||| ||| ||| | Sbjct 1271 ATGATTCC-TACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 1214 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || ||||| || || ||||||||||| || |||| || || | |||||||||| Sbjct 1213 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1154 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | ||||| |||||||| |||| ||| ||||| ||||| || ||||||| ||||| | Sbjct 1153 ATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAA 1094 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| ||| | || |||||| | |||||||| ||||||| | || ||| Sbjct 1093 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | | |||||| | |||| | | ||||||||| ||||||||||||||| || || Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| ||||||||||||||| || ||||| || |||||||| || || || | || Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || ||| || | ||||| |||||||||| ||| || |||| |||||||| || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 |||||||||| || |||| ||| |||| ||||| || ||||||||||| || ||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | || || ||| | |||||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| |||| |||||| || | | |||||||| ||||| || || || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 |||||| || |||||||| ||||| || || || ||||| || || || || || || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 | || |||| |||||||| ||| || |||||||| || || | || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 ||||||||||||| || || |||||||||||||| | || | ||||| ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 | || ||||||||||| |||||||| ||| | ||||||||||| ||| || || || | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 ||||||| || || | ||||||||| ||||| |||||||| ||||| || || |||| Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCTG 161863 |||| || |||||||| ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 547 bits (606), Expect = 7e-151 Identities = 733/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||||||||||||||| || ||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| |||| | ||||||||| | || || || || || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || |||||||| || ||| | || ||||||||| | || ||| ||||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || |||||||||||||| || | | | | |||||| | | | ||||||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || | ||||||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || ||||||||||| || | ||| |||||||| ||| | || || |||||||| || ||| Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 162477 CTTATCGGT---ATT-CGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATT 162532 || || ||| || ||||| ||||| || || ||||| ||||| ||||| || || Sbjct 33180 ----TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 162533 CGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTT 162592 ||| ||| || || || ||||| | || || || |||||||| || || || Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 162593 CGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCT 162652 || || ||||| || || |||||| | ||||| ||||||| || ||||| ||||| || Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 162653 AAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTAT 162712 || || ||||| |||||||| || || ||| | | || | ||| |||| | ||||| Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 162713 TCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAA 162772 |||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 162773 AGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTG 162832 || ||| || | || || | |||||||| ||||| ||||| || || |||||||| || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 162833 GTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTT 162892 ||| || ||||| || |||||||| || || |||||||| |||||||||||| | || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 162893 TGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCT 162952 ||| || || | ||| | |||| ||| || | || | |||| || ||||| || || Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 162953 TCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGAC 163012 ||||| || ||||| || ||||| ||| | ||||| || ||||| ||||| |||||||| Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 163013 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGA 163072 |||||||| || || |||||| | |||||||| |||| || ||| | || | || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 163073 CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||||||| ||| || | |||||||| ||||| | || | || |||||||| Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 67249 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 67190 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| |||||| Sbjct 67189 CCTGTCATCCCTACTTAT 67172 >seq13 Length=15658869 Score = 143 bits (158), Expect = 3e-29 Identities = 324/486 (67%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 161247 TCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGT 161306 |||||||||| || ||||| || |||||| | | || | | || || || || | Sbjct 4833066 TCCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGACAACTATTGTTGTTTTTTTGAT 4833125 Query 161307 CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTT 161366 || | | ||| ||| ||| || |||| ||||||| || || | |||||| || Sbjct 4833126 TTACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTT 4833185 Query 161367 CAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCT 161426 |||| ||| |||| ||| |||| ||||| |||| || || |||| || || ||| | Sbjct 4833186 TAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTT 4833245 Query 161427 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 161486 |||||| ||||| | | | || | | || || ||||| |||| |||| || Sbjct 4833246 AGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAAC 4833305 Query 161487 CTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGG 161546 |||| || | ||||||| |||| || ||| || | ||||||| || || Sbjct 4833306 CTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGG 4833365 Query 161547 TCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTT 161606 |||| | ||||| || || ||||||| | ||| || || | || || | | ||| || Sbjct 4833366 TCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTT 4833425 Query 161607 CCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGT 161666 | |||| ||| || |||| ||| | || | || |||||| | | | |||||||| | Sbjct 4833426 CTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTAT 4833485 Query 161667 TGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTT 161726 | || |||||||||||| | | || | ||||| ||| | |||| || ||| ||| Sbjct 4833486 AATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAAT--TTT 4833543 Query 161727 CAACTT 161732 | |||| Sbjct 4833544 CTACTT 4833549 >seq1667 Length=4831 Score = 102 bits (112), Expect = 9e-17 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTA--AAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTG 162174 |||||| | | || |||||| ||| |||| |||||||| |||||||| || ||||||| Sbjct 2905 TTTGATATTATGGATGACTGG-TTACGAAAG-GACCGTTTTGTTTTTGTGGGTTGGTCTG 2962 Query 162175 GACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTT 162234 | || | || ||||| ||| ||| |||| | ||||||||| | || | | || | Sbjct 2963 GTCTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCT 3022 Query 162235 TCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGA--GGGTGCAAACTT 162292 | || || |||||||| || ||| | || ||||||||| |||| || ||||| ||| Sbjct 3023 TTGTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGCAA-CTT 3080 Query 162293 TCTTACTGCGGCAGTTTCTACTCCAGC 162319 | || || | |||||||||||| || Sbjct 3081 CTTAACCGCTGTAGTTTCTACTCCTGC 3107 >seq8 Length=18835763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||||||| ||||||| | || || || || ||| ||||| ||| | || || Sbjct 1005454 TACATCCTTGACTCAGCTGAAAATGCAGGAGTGGAGCTCCCATACTCATGCAGAGCCGGA 1005395 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || | | || || || ||||||||||| || || Sbjct 1005394 GCCTGCTCTACTTGTGCTGGTATGTTGGTTTCAGGGTCCGTAGACCAATCAGATGGTTCA 1005335 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || || | || || || || | | | || || ||||| || ||||| || Sbjct 1005334 TTCCTTGATGAGAAACAGATGGAGAAGGGATACGTCCTTACCTGTGTCTCATATCCAACT 1005275 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 || ||||||||| | || ||||||| || || ||||||||| Sbjct 1005274 TCGGACTGTGTGATTCACACACACAAGGAGGAAGATCTGTATTGA 1005230 >seq4 Length=23188140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| || ||||| ||| | || || || || || ||| || ||| | || || Sbjct 20462751 TACATCCTAGATGCAGCCGAGAATGCAGGAGTTGAGCTGCCTTATTCTTGCAGGGCTGGG 20462692 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||||| | ||||| || || | | || || | || ||||| || || Sbjct 20462691 GCTTGTTGTACCTGTGCTGGGAAGGTGGCATCAGGTTCTGTCGACCAGTCTGATGGTTCT 20462632 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| ||||| || ||||| | |||| |||||||||| ||||| || || || Sbjct 20462631 TTCCTTGACGAGGATCAAATGAAGGACGGTTATCTTCTGACTTGCGTTTCCTACCCAACT 20462572 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAG 158551 |||||||||||| | ||| ||||||||| Sbjct 20462571 TCAGATTGTGTGATTCACACTCACAAGGAAG 20462541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547729987044240