Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2514 526 7e-145 seq18 80.6 8e-11 >seq2514 Length=157033 Score = 526 bits (582), Expect = 7e-145 Identities = 714/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 348 AGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 407 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 408 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 465 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| ||||| |||||||||||| || || | || || Sbjct 466 -GATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGT 524 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| ||||||||||||| | | ||||| Sbjct 525 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTT 584 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 585 AAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 644 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||| ||| || || ||||| Sbjct 645 AGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 704 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | || || || | | || ||||||||| ||||| | || ||||| Sbjct 705 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 764 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 765 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 824 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || || |||||||| || || |||||||| ||||| || ||||| || Sbjct 825 TACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCC 884 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| || | ||||||| | ||||| || | || | || || || || || || ||||| Sbjct 885 TTGACCGATTGGATAAATCAAGAAA-ACAGCAGTA-GCCGCCGCAACAGGAGCTGAATAT 942 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || |||||||| || | ||||||||||||| | || |||||| Sbjct 943 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATG 1002 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| || | ||| || || ||||| ||| Sbjct 1003 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTAT 1062 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || ||| |||||||| |||||||| ||||| | || || || | Sbjct 1063 AACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCA 1122 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || || || ||||| ||||||||||| |||| | ||| || ||| Sbjct 1123 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 1182 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| ||||| || ||||| ||||||| || || || | |||| | Sbjct 1183 GGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA 1242 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||| ||||| | || |||||||| || | || || ||| Sbjct 1243 GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGG 1302 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||| | ||| || Sbjct 1303 TTTTCAGTGCTGGTTATCCAATTACAGAA 1331 >seq18 Length=14966190 Score = 80.6 bits (88), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 18633 ATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCA 18692 ||||| ||||||||||| | | | ||| || | ||| |||||||||||||| ||||| Sbjct 5914929 ATGATATTGTTTCCATAAATTTAA--TCCAGAAAAAGGTTCACGAATACCATCAATGTCT 5914872 Query 18693 ACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGG 18752 | ||||| | | ||| || || || | |||| | | || |||||| || | | ||| Sbjct 5914871 ATTGGAGGGGTATCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGA 5914812 Query 18753 ATCATAAGTACCCCAAACCACCC 18775 ||||| | || |||||||| || Sbjct 5914811 ATCATCAAAACACCAAACCATCC 5914789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151313882578316