Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2514 536 2e-147 seq4 113 6e-20 seq9 87.8 2e-12 >seq2514 Length=157033 Score = 536 bits (594), Expect = 2e-147 Identities = 729/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 33832 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33773 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||||| || || || || || || ||||| ||| Sbjct 33772 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTATAGAAAGTC 33713 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || || || || |||||||| ||||| ||| Sbjct 33712 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 33653 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| ||||||| | || | | ||| |||| | ||| | || || ||||| Sbjct 33652 TTCAGAGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 33593 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||| ||||| ||||| Sbjct 33592 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGACCAA 33533 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || ||||| |||||||| ||||| |||| || | | || || | Sbjct 33532 AAGCGGTTGGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33473 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 33472 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 33413 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| |||||||| || Sbjct 33412 GCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGT 33353 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| ||||| || ||||| Sbjct 33352 GTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACGCCAAAA 33293 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 33292 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 33233 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAGC 102368 || || || || |||||||| || || ||||| || || || |||| || | | ||| Sbjct 33232 ACCGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGTAATTGCACGGATCG-AGC 33174 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || |||||||| | ||| ||||| || || | || || ||||||||||| ||||| Sbjct 33173 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCTCCGTGGAGAGCAACAAA 33114 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 || ||| | || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 33113 AGTCCACAAGCCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 33054 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 |||| | | |||||| | | | | |||||| || || || || || || | ||| Sbjct 33053 TAGTAATAATAAAGAATGGGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTTAAGAA 32994 Query 102549 ATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || |||||| | || | || | || ||||||||||| || || |||| || Sbjct 32993 GTTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAGGTTACAAAGGT 32934 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || || | ||| ||||| | || | ||| ||| ||||| || | ||| || || Sbjct 32933 TGTACCTGTGAACCAACCCCCTAAGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGA 32874 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||||||| || || || || | | ||||||||||| || ||||| Sbjct 32873 CCAACCCACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32820 Score = 522 bits (578), Expect = 3e-143 Identities = 691/963 (72%), Gaps = 4/963 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || ||||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||| | || || |||||||| || | |||||||| |||| ||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || || ||||| ||||| ||||||| ||| | || | Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 ||||||||||||| ||||| || | ||||||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 | || || |||||||||||||| || || || |||||||||||||||||||| || | Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| || || ||||||| | || ||||||| |||| || || | Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 | | || | | | | || || || | ||||| |||||||||||||| || || || ||| Sbjct 704 CCCTGATCAAACTA-GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCG 762 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || ||||| ||||| | |||||| || |||||||| || ||||| || || || ||| Sbjct 763 AATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 822 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | ||| |||| || || || || || || | |||||| |||| || || Sbjct 823 AATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTT 882 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||| | || || | |||||| || || | || |||||||||||||| || ||| Sbjct 883 CCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATAT 942 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| || ||||| ||||||||| | | |||||||||||| ||||| Sbjct 943 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATG 1002 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | | |||| | |||||| | || | || | ||||||| ||||| || Sbjct 1003 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTAT 1062 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948 | ||| ||||||| ||||| |||||||| || || || ||||| | || || || Sbjct 1063 AACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCA 1122 Query 103949 GAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACG 104008 || | |||| || |||||||| ||||| ||||| || || | || || |||| || Sbjct 1123 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 1182 Query 104009 GGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCA 104067 ||||||||||| || || || || || ||||| || || | |||||| | || || || Sbjct 1183 GGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA 1242 Query 104068 GATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACG 104127 || ||||| | ||| | ||| || ||||||| ||||| ||||| |||| ||| ||||| Sbjct 1243 GA-AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACG 1301 Query 104128 GTT 104130 ||| Sbjct 1302 GTT 1304 >seq4 Length=23188140 Score = 113 bits (124), Expect = 6e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACC-TGCTTCTAGTTGATCGTCAT 102872 ||| ||||||||||| | ||||| ||||||| | |||| | |||| | |||||| || | Sbjct 20462566 ATCTGAAGTTGGGTAGGAAACGCAAGTCAGAAGATAACCGTCCTTC-ATTTGATCCTCGT 20462624 Query 102873 CCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAG 102932 | || || || ||| || || |||| ||| ||| | | ||| |||||||| ||| Sbjct 20462625 CAAGGAAAGAACCATCAGACTGGTCGACAGAACCTGATGCCACCTTCCCAGCACAGGTAC 20462684 Query 102933 AACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTA 102992 |||| || ||||| | || ||||||||||| ||||| ||||| | || || || |||| Sbjct 20462685 AACAAGCCCCAGCCCTGCAAGAATAAGGCAGCTCAACTCCTGCATTCTCGGCTGCATCTA 20462744 Query 102993 GAATATATTGATCATC 103008 | || ||| ||||| Sbjct 20462745 GGATGTATGTGTCATC 20462760 >seq9 Length=12942059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869 |||| || |||||||| || | | ||| || |||| | | || | | | ||||| | Sbjct 12537620 CACAGTCAGAAGTTGGATAGGAAATGCAAGTTAGAAGATAGCCCTCCCCCATTTGATTCT 12537679 Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929 |||| || || || ||| || || |||| ||| ||| | ||| |||||||| | Sbjct 12537680 CATCGAGGAATGAACCATCAGACTGGTCGACAGAACCTGATGCCGCCTTCCCAGCACAGG 12537739 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 ||||||| || ||||| | || ||||||||||| |||| ||||| | ||||| || | Sbjct 12537740 TAGAACAAGCCCCAGCCCTGCAAGAATAAGGCAGGTCAATTCCTGCATTCTCAGCGGCAT 12537799 Query 102990 CTAGAATATA 102999 |||| || || Sbjct 12537800 CTAGGATGTA 12537809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493691835120