Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 6e-15 seq7 91.5 7e-14 >seq5 Length=25802683 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||| || || ||||| |||||||| || || | ||||| |||||||| || ||| Sbjct 6278354 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCA 6278413 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||||| | ||| | || || ||||| | | |||| | ||| || | | Sbjct 6278414 ACATTGGAACAATGCCATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCAC 6278473 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | ||| ||| | ||||||||| || || |||| ||| | ||||| || Sbjct 6278474 GGATGTTGTGGGCAGATACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCT 6278533 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||||| || |||||| ||||||| Sbjct 6278534 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 6278573 >seq7 Length=15101417 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||| || || ||||| |||||||| || || | ||||| |||||||| || || Sbjct 5425432 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCA 5425491 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||||| | ||| | || || ||||| | | |||| | ||| || | | Sbjct 5425492 ACATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCAC 5425551 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| || | ||| ||||| ||||| |||| ||| | ||||| || Sbjct 5425552 GGATGTTGTGAACAGATACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCT 5425611 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||||| || |||||| ||||||| Sbjct 5425612 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 5425651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032247012550