Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2514 500 1e-136 seq6 131 2e-25 seq18 116 4e-21 seq1667 96.9 4e-15 >seq2514 Length=157033 Score = 500 bits (554), Expect = 1e-136 Identities = 703/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||| || || ||||| | ||||||||||||||||||||| | ||| Sbjct 349 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 408 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || | | || | | |||||| || ||| Sbjct 409 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 468 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | ||||| ||||| |||| ||||| | || || ||| Sbjct 469 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 528 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | |||| |||||| || | | | |||||||| || Sbjct 529 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAA 588 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 589 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 648 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| || || | ||||| | || || || | ||||| ||||| ||| Sbjct 649 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 708 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | |||||||||||| || ||||| || || ||||| | Sbjct 709 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 768 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 769 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 828 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||||||||| |||||||| ||||| || || ||||| ||||| || || || ||| Sbjct 829 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 888 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | ||| || | ||||| ||||| || || | || || |||||||| |||||| Sbjct 889 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 948 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | |||||||| Sbjct 949 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAA 1008 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| || || || |||||| Sbjct 1009 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 1068 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| |||||||| |||||||| ||||| | || ||||| || | Sbjct 1069 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTA 1128 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| ||||| ||||| ||||| | | ||| || | || ||||| Sbjct 1129 GGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1188 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || || || || ||||| || ||||| || || | || || ||| | | Sbjct 1189 CGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGT 1247 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | ||| |||||||| | |||||||||||| |||| ||||| | ||| | Sbjct 1248 TGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTC 1307 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 1308 AGTGCTGGTTATCCAATTACAGAA 1331 Score = 394 bits (436), Expect = 1e-104 Identities = 712/1039 (69%), Gaps = 23/1039 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 33836 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 33777 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | ||||||||||| | |||||| || || |||||||| Sbjct 33776 ATCTTGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTATAGAA 33717 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || ||||| || ||||| || || | Sbjct 33716 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACG 33657 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || ||||| || | || | || |||| | ||| | || || || Sbjct 33656 TAGGTTCAGAGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 33597 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 33596 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGA 33537 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 33536 CCAAAAGCGGTTGGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 33477 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 33476 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 33438 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || | || || ||||| Sbjct 33437 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAAC 33378 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| ||| || || || ||||| | || | ||| | Sbjct 33377 TCCCATCATATGAAATGGGTTCAGTGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAA 33318 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| |||||||||||| Sbjct 33317 TCGAAATATAGCTGCTACGCCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGG 33258 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || | |||||||||||| ||| || || Sbjct 33257 ATAAATCAGGAATACAGAAACAAAAACCGCAATTGGACCAGAGAATGCGATTGCATTATA 33198 Query 123526 AGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||||| |||| | || || || | |||||||| | | ||| |||||||| |||| Sbjct 33197 AGGTCGTAATTGC-ACGGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTC 33139 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 | || |||| || | || ||||| |||| | || || | ||| |||||||| | Sbjct 33138 CGAAAGCTCCGTGGAGAGCAACAAAAGTCCACAAGCCACCTAATTGACACCAACGAGTAA 33079 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||||||||||||| ||||| || || | | | ||| | | | | ||| Sbjct 33078 AATCTCCTTGTGCTTCAGGACCCCATAGTAATAATAAAGAATGGGCTAAACTATTAGCAG 33019 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || ||||| || ||||||||||| || || | ||| ||| || | |||| Sbjct 33018 GAGTAGAAACTGCGGCGGTTAAGAAGTTGCAACCTTCCAAATAGGAACTGGCCAATCCAT 32959 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| | Sbjct 32958 GGGTATACCATGAGGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAGGCAAAATAGG 32899 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | || || ||||| ||||| || | || || ||||| || ||| ||||| Sbjct 32898 CACAAGGAAAGAGCAATAGACCGGACCAACCCACAAAAACGAAACGGTCCCTCCGTAACC 32839 Query 123885 AGTCGTCAAGAACATCAAA 123903 |||| || | || |||||| Sbjct 32838 AGTCATCCATAATATCAAA 32820 >seq6 Length=26894541 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||||||||| || ||||| ||||||| | | || || |||| || || ||||| Sbjct 23160675 CATTGCCTCTGCAGCAGCAGTCCCTTCATCAAGCAATGAAGCATTTGACATAGGCAATCC 23160616 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || ||||| | ||||||||||||| |||| |||||||| ||||||||||| Sbjct 23160615 AGTAAGATCCGTGATCATGGTTTGGTAATTGAGCAAAGACTCCAATCTACCCTGAGATAT 23160556 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||||||||| || || ||||| || |||||| |||||||| Sbjct 23160555 CTCAGCTTGGTACGGTGTGTACTGGGTATACCAAGCCGGATTCTC 23160511 Score = 122 bits (134), Expect = 1e-22 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| ||||| || ||||| || | |||||||||||| ||||||| Sbjct 23161216 CTTGAGCAGTACAGATGTTGCTGGTAGCCTTGTCCCTGCGAATATGCTGCTCCCTAGTTT 23161157 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCT 139432 | | || | | ||||| || ||| || |||| || ||| | |||||| Sbjct 23161156 GCATCGCCATGCGCAGAGCAGGCTTTCCTGAAGAATCAACACTAAC--ACCAATAATTCT 23161099 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | || ||||| || || |||||||||||||| || Sbjct 23161098 ACCAGGCATCATCCTCTTGTACTCTTGTGAGGTTGCCAAAAACGCAGCATGAGGACCACC 23161039 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 || ||||| |||| ||||||||| || ||| ||| ||||||| Sbjct 23161038 ATACCCCATTGGAACACCAAACCTCTGAGCTGAACCAACAACAATATC 23160991 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| ||||||||||| ||||| || ||||| || || Sbjct 23164142 ACACCAATAGGACCCATGCCAGGACCACCACCTCCATGCGGAATGCAAAATGTTTTGTGG 23164083 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | ||| ||||| || ||||| || ||| Sbjct 23164082 AGATTGAGATGGCAAACATCAGCTCCA 23164056 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||| ||||| | || || ||||| | ||||| ||||||||||||||||||| ||| Sbjct 23163462 ACCTGAGCATTCATGTTAGCCCCATCCATGTATACTTGACCACCATTGTCATGAATTATC 23163403 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 |||||||||| ||| | |||| | || || ||||| || |||||||||| Sbjct 23163402 TTACATATCTCATCGATTCCTTCTTCATAGACCCCGTGAGTTGAGGGATATGTAA 23163348 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 137831 CTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGCATGAAA 137890 ||| |||||||| | ||| | ||||| || ||||| || | ||||||||||||||| Sbjct 23165255 CTCAGTGGGTTCAATCATAAGTGTTCCAGGAACTGGCCATGACATTGTAGGTGCATGAAA 23165196 Query 137891 TCCATAGTCCATAAGTCTCTTTGCTATATCTTC 137923 ||||||||||||||| | ||| || | |||||| Sbjct 23165195 TCCATAGTCCATAAGACGCTTGGCAACATCTTC 23165163 >seq18 Length=14966190 Score = 116 bits (128), Expect = 4e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||||||||| || ||||| ||||||| | | || ||||||| || || ||||| Sbjct 4653876 CATTGCCTCTGCAGCAGCAGTCCCTTCATCAAGCAATGAAGCGTTTGACATAGGCAATCC 4653935 Query 139919 TGTAAGTTCTGTGATGAGCGTTT-GGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 ||||| || || || | |||| ||||||||| |||| |||||||| |||||||||| Sbjct 4653936 AGTAAGATCCGTAATCATGGTTTTGGTAATTGAGCAAAGACTCCAATCTACCCTGAGATA 4653995 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||| || | ||||| || |||||| |||||||| Sbjct 4653996 TCTCAGCTTGGTA-CGTGTGTATTGCGTATACCAAGCTGGATTCTC 4654040 Score = 102 bits (112), Expect = 9e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 || |||||||| ||||| | ||||| || | |||||||||||| |||||||| | ||| Sbjct 4653353 GTACAGATGTTGCTGGTAGTCTTGTCCCTGCGAATATGCTGCTCCCTAGTTTGCATTGCC 4653412 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGCCAGGTA 139440 | | ||||| || || ||| |||| || ||| | |||||| ||||| | Sbjct 4653413 ATACGCAGAGCAGGCTTTCCCGAAGAGTCAACACTAAC--ACCAATAATTCTACCAGGCA 4653470 Query 139441 TCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCA 139500 || | ||||| |||| | || || || || ||||| ||||||||||| | || |||| Sbjct 4653471 TCATCCTCTTGTACTCTTGTGAGGTAGCCAAAAATGCTGCATGAGGACCCCGATACCCCA 4653530 Query 139501 TAGGAATACCAAACCTTTG 139519 | ||| ||||||||| || Sbjct 4653531 TTAGAACACCAAACCTCTG 4653549 >seq1667 Length=4831 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCT--CAAGATATGAAGATGCAAT 123759 |||| || || ||| | || ||||||||||| || ||| ||| ||| ||| || | Sbjct 3106 CAGGAGTAGAAACTACAGCGGTTAAGAAGTT-GCAACCTTTCAA-ATAGGAACTGGCCAA 3049 Query 123760 ACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAG 123819 ||||| ||||||||||| || || ||||| | || ||||||||| || | | | Sbjct 3048 TCCATGGGTATACCATGAGGTTACAAAGGTTATAACTGTGAACCAACCCCCTAAGGCAAA 2989 Query 123820 ATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTT 123879 ||| ||| |||| | || || ||||||||||| || | || |||||||| || | Sbjct 2988 ATAGGCATAAGGAAAGAGCAATAGACCAGACCAACCCACAAAAACAAAACGGTCCTTTCG 2929 Query 123880 TAACCAGTCGTCAAGAACATCAAA 123903 ||||||||| || | || |||||| Sbjct 2928 TAACCAGTCATCCATAATATCAAA 2905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578980204975280