Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2514 600 2e-166 seq13 123 3e-23 seq6 118 1e-21 seq19 98.7 1e-15 seq18 98.7 1e-15 seq1667 96.9 5e-15 >seq2514 Length=157033 Score = 600 bits (664), Expect = 2e-166 Identities = 728/989 (74%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||||||| || || | || |||||||| || || | ||| || || || || | |||| Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 | ||||||||| | || || ||||| || || | |||||||| || ||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 |||| || ||||| |||||||| || |||||||||||||| ||| | ||| | || | Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 |||||||||| || || || ||||| ||||| | |||||| || || ||||| ||||||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 | || |||||||||||||||||| || || || || ||||| || || ||||| || | Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 | || ||||| |||||||| || | ||||| | || || ||| |||| || || | Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 | | || | ||| || |||| | || ||||||||| ||| || || || |||| Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 |||| ||||| || || | |||||| || |||||||||||||| ||||| || ||||||| Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAAC 27268 |||||| ||| ||||||||||||||||||| || |||||||| |||| || ||| | Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883 Query 27269 CTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATG 27328 ||||||||| ||||| | | ||| || ||| | || || || || ||||| ||||||| Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 943 Query 27329 CTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATAT 27388 | ||| ||||| ||||||||||| | ||| | |||||||||||||| ||||| | Sbjct 944 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGT 1003 Query 27389 AAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACA 27448 || | | || | | |||||| | || | || | ||||||| ||||| || | Sbjct 1004 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 1063 Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTG 27508 |||| ||||| | ||||| |||||||| |||||||| ||||| | || || || | Sbjct 1064 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 1123 Query 27509 AACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGG 27568 || | || | || |||||||||||||| ||||| ||||| | || || |||| ||| | Sbjct 1124 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1183 Query 27569 GTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAG 27627 ||||||||||||| ||||| || || || || || || ||||| |||| ||| || ||| Sbjct 1184 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 1243 Query 27628 ACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGG 27687 | |||||| | || | || || ||||||| ||||| ||||| |||| ||| | |||| Sbjct 1244 A-AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGG 1302 Query 27688 TTGTTAGTTGATGTCACCCACTCACAGAA 27716 || | ||| || | ||| | |||||| Sbjct 1303 TTTTCAGTGCTGGTTATCCAATTACAGAA 1331 Score = 527 bits (584), Expect = 8e-145 Identities = 730/1019 (72%), Gaps = 2/1019 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 33837 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33778 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | ||| | || || | ||||||||| || |||| Sbjct 33777 GATCTTGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTATAGA 33718 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || || ||| || || ||||| |||| Sbjct 33717 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCAC 33658 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || ||||| || |||| | |||| || | | ||| | ||| | || || | Sbjct 33657 GTAGGTTCAGAGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 33598 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| || ||||| | Sbjct 33597 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGG 33538 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 33537 ACCAAAAGCGGTTGGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 33478 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 33477 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33418 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | |||| || ||| ||||||||||||||||| || |||| Sbjct 33417 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 33358 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | || ||||| |||||||| || |||| ||||| | ||| | || || || || || | Sbjct 33357 TCAGTGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACGC 33298 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 33297 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 33238 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACG-GATTCCAATTAGA 24044 | || || ||||| |||||||| || || || ||||| || || || ||| || | Sbjct 33237 CAAAAACCGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGTAATTGCACGGA-T 33179 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| ||| | || || |||||||||||| Sbjct 33178 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCTCCGTGGAGAGCA 33119 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| | || || | ||| ||| || ||| || ||||| | |||||| Sbjct 33118 ACAAAAGTCCACAAGCCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 33059 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | |||||| | | | | |||||| || || || || || || Sbjct 33058 CCCCATAGTAATAATAAAGAATGGGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTT 32999 Query 24225 AGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACA 24284 | ||||| ||| || | ||||||||| || | ||||||||| ||||| || ||| Sbjct 32998 AAGAAGTTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAGGTTACA 32939 Query 24285 AAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGT 24344 || | ||| || || | |||||| || | ||||| ||| ||| |||| || | || Sbjct 32938 AAGGTTGTACCTGTGAACCAACCCCCTAAGGCAAAATAGGCACAAGGAAAGAGCAATAGA 32879 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 || |||||||||||||| || || || |||| | |||||| |||| || ||||| Sbjct 32878 CCGGACCAACCCACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32820 >seq13 Length=15658869 Score = 123 bits (136), Expect = 3e-23 Identities = 271/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 26860 AAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATG 26919 |||| |||| || ||||||| || ||| ||| | ||||| | ||||||||||| Sbjct 4833549 AAGTAGAAAA--TTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATA 4833492 Query 26920 CCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCA 26979 || | | ||||| | | | | |||||| || || ||| | ||| |||| || |||| Sbjct 4833491 CCTATTATAGGCCAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGCA 4833432 Query 26980 TATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCT 27039 |||| ||||||| | || || | ||||| || | ||||||| || || ||||| Sbjct 4833431 TATTAGAAGATCGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTCC 4833372 Query 27040 TCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGT 27099 | |||||| || | ||||| | || || ||| ||| | || || || | Sbjct 4833371 TTTTGACCAAATCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCAAA 4833312 Query 27100 GAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCA 27159 ||| || |||| | || |||||| || | | | || || | ||| || | Sbjct 4833311 TTAGAGGTTACCAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTGTT 4833252 Query 27160 ACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATG 27219 || || | |||||| || |||| |||||||| | || || || | |||||||| ||| Sbjct 4833251 ACGCCTAACATGTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCATA 4833192 Query 27220 TAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||||||| | || || ||||||| |||| || ||| Sbjct 4833191 AAGTTAAAAGTACCAAATATTCCTAGAGGCACCCCATCTGAAAAA 4833147 >seq6 Length=26894541 Score = 118 bits (130), Expect = 1e-21 Identities = 184/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| | || | | |||||||||||| ||||||||| | Sbjct 18298123 ATCAATGCCGGCAAAACATGAGAATTCTCCGGATGAAAATTATCATTCCGACCATATAAG 18298182 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || ||||| ||| ||||||| | | |||||| ||| ||||| |||||| Sbjct 18298183 TTGGTCGGCATTCCAGAAATAGCATCCCAGCTATACTGAATCCTGTAAGCCTGGCACATC 18298242 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 || || ||||| ||||| ||||| || || | ||||| |||| || | ||| ||| | Sbjct 18298243 TTAATCCCAGCTATCTTCGCAATTGCGTACCACTCATTCGTAGGCTCTAAAGGCCCAGTA 18298302 Query 47160 ATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCA 47219 | || | ||| ||| || || ||| ||||| ||||| || ||||| || Sbjct 18298303 AGCAGTGCATTTTCAGGAATGGGCTGCGGTGCTAACTTTGGGTAAATACATGAAGATCCC 18298362 Query 47220 AGAAATAAAAGTTTCTTAACACC 47242 | ||| |||| ||||||||| || Sbjct 18298363 AAAAACAAAAATTTCTTAACTCC 18298385 >seq19 Length=16008726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 23770 CATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTC 23829 |||||||| | | ||||| || |||||| | |||||||||||| | | || || | | Sbjct 8025945 CATCTTCA-ATAAAGTATTTTCTACAGTAGCACCATGAATAGCACATAACAGAGCAACGC 8026003 Query 23830 CCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCT 23889 ||| || ||| ||||||||| ||||||| || | ||| || ||||| |||||||| || | Sbjct 8026004 CCAATACACCGGCAACTCCCGTCATATGAAATGCGTTCAGTGTCCAATTATGAAATCCTT 8026063 Query 23890 GGAGGAAGAGAAGGAA 23905 ||| ||||| | ||| Sbjct 8026064 GGAAAAAGAGGATGAA 8026079 >seq18 Length=14966190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| ||||| | | |||||||||||| || ||||||| Sbjct 11868163 ATCAATGCCGGCAAAACATGAGAATTTTCTGGATGAAAATTATCATTCGGCCCATATAAA 11868104 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || ||||| ||| ||||||| | |||||| ||| ||||||||||| Sbjct 11868103 TTCGTGGGCATTCCAGAAATAGCATCCCAATTATACTGAATCCTGTAAGCCTGACACATT 11868044 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 || || |||| ||||| ||||| || || | ||||| | || || | ||| ||| | Sbjct 11868043 TTAATCCCAGATATCTTCGCAATCGCGTACCACTCATTCGTTGGCTCTAAAGGCCCAGTA 11867984 Query 47160 ATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCA 47219 | || | ||| ||| || || || || || ||||| || || || || Sbjct 11867983 AGCAGTGCATTTTCAGGAATCGGCTGCGGTGCTAGCTTAGGGTAAATACAAGAGGATCCC 11867924 Query 47220 AGAAATAAAAGTTTCTTAACACCA 47243 | ||| || ||||||||||| ||| Sbjct 11867923 AAAAACAACAGTTTCTTAACTCCA 11867900 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 |||||| ||||||| ||||| ||||| || | | |||| || |||||||||||||| Sbjct 5914938 GCACCATAAATGATATTGTTTCCATAAATT--TAATCCAGAAAAAGGTTCACGAATACCA 5914881 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAA 27641 ||||| || | || || | | ||||| |||| ||| || |||| |||||| | || Sbjct 5914880 TCAATGTCTATTGGAGGGGTATCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAA 5914822 Query 27642 CAGTGTTGGGATCATCAGTACACCGAACCAACCAA 27676 | || || ||||||| ||||| ||||| |||| Sbjct 5914821 TAAAGTAGGAATCATCAAAACACCAAACCATCCAA 5914787 >seq1667 Length=4831 Score = 96.9 bits (106), Expect = 5e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 24200 AGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCT--CAAGATAGGAACTAGCA 24257 |||||| || || || | || || | ||||| ||| ||| ||| ||||||||| || Sbjct 3108 AGCAGGAGTAGAAACTACAGCGGTTAAGAAGTT-GCAACCTTTCAA-ATAGGAACTGGCC 3051 Query 24258 AGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCA 24317 | ||||||||| ||||| || ||||| | | | | || | |||||| || | |||| Sbjct 3050 AATCCATGGGTATACCATGAGGTTACAAAGGTTATAACTGTGAACCAACCCCCTAAGGCA 2991 Query 24318 AGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGT 24377 | ||| ||| |||| || | || ||||||||||||||||| ||||| || ||| | Sbjct 2990 AAATAGGCATAAGGAAAGAGCAATAGACCAGACCAACCCACAAAAACAAAACGGTCCTTT 2931 Query 24378 TTAACCCAGTCGTCCAAGATGTCAAA 24403 | |||||| |||| || ||||| Sbjct 2930 CGTAACCAGTCATCCATAATATCAAA 2905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665473486838480