Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq14 107 2e-18 seq5 91.5 2e-13 seq7 84.2 3e-11 >seq2 Length=23562801 Score = 118 bits (130), Expect = 1e-21 Identities = 278/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| | || ||||||| | || | || || || || Sbjct 19330700 GAGGTAGTGGAGTTTCTCAAGAAGCCTGAGAGATTTACTGCAGTAGGGGCTCGCATTCCG 19330759 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | || |||||||| || ||||| || || ||| || || Sbjct 19330760 AAAGGTGTTCTTCTTGTTGGACCTCCAGGTACTGGGAAGACTCTTCTGGCCAAGGCAATT 19330819 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| || || || || | || | | | ||||| ||||||| Sbjct 19330820 GCTGGTGAAGCGGGTGTTCCGTTTTTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGT 19330877 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| | || || |||||||| | | ||| || ||| | Sbjct 19330878 TTGTTGGTGTTGGTGCCTCTCGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGCTC 19330937 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | || ||||| || | ||||| |||||||| ||||| | |||| | | |||| | Sbjct 19330938 CTTGCATTGTGTTTGTGGATGAAATTGATGCCGTGGGAAGGCAAAGAGGAACTGGAATTG 19330997 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || |||||| || ||||| || || |||| || || || || || |||||||| | Sbjct 19330998 GCGGAGGAAATGATGAAAGAGAGCAGACCCTTAACCAGCTTCTGACAGAAATGGATGGTT 19331057 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||| | | |||||||| | || |||| || ||||| | | || || ||||| Sbjct 19331058 TTGAGGGTAATACTGGCATCATTGTCGTTGCAGCAACTAACAGGGCAGACATTCTTGA 19331115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 226/340 (66%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || ||||| || || ||| || || || |||||| | ||| || || Sbjct 19351393 CCAGGTACTGGGAAGACTCTTCTGGCCAAGGCAATTGCTGGTGAAGCGGGTGTTCCGTTT 19351452 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT------TGTTGGTGTGGGTGCCA 175426 || || | || | | | ||||| |||||||| ||||||||| |||||| Sbjct 19351453 TTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGTTGGTGCCT 19351510 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 | || || |||||||| | | ||| || ||| || || ||||| || | | Sbjct 19351511 CTCGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGTTCCTTGCATTGTATTTGTGG 19351570 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546 |||| |||||||| ||||| | |||| | | |||| | || |||||| || | Sbjct 19351571 ATGAAATTGATGCCGTGGGAAGGCAAAGAGGAACTGGAATTGGCGGAGGAAATGATGAAA 19351630 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| || || |||| || || || || || |||||||| ||||| | | ||||||| Sbjct 19351631 GAGAGCAGACCCTTAACCAGCTTCTGACAGAAATGGATGGTTTTGAGGGTAATACTGGCA 19351690 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | || |||| || ||||| | | || || ||||| Sbjct 19351691 TCATTGTCGTTGCAGCAACTAACAGGGCAGACATTCTTGA 19351730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 190/284 (67%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 |||||| || || ||||| | | ||| |||| | || || || | || || || Sbjct 702940 GCCAGGGACTGGGAAGACATTGTTGGCCAGAGCTGTGGCAGGAGAGGCGGGGGTGCCGTT 702881 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | | |||| | ||| | | ||||| ||| |||||||||| ||||| || || || Sbjct 702880 CTTTTCGTGCGCAGCCTCGGAGTTTGTTGAGTTGTTTGTTGGAGTGGGGGCGTCGAGAGT 702821 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGAT 175488 | ||| | ||||| | || ||| |||| || || |||||||| |||||| Sbjct 702820 GAGAGATTTGTTTGAGAAAGC-----AAAGTCAAAAGCGCCCTGCATTGTCTTTATTGAT 702766 Query 175489 GAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGA 175546 || ||||||||||| || | ||| | | ||||| | | | | | ||||| |||| Sbjct 702765 GAAATTGATGCGGTTGGGAGGCAGAGAGGGGCTGGACTTGGAGG--GGGGAATGATGAGA 702708 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || || |||||||| | | || || |||||||| ||| Sbjct 702707 GAGAGCAGACCATTAATCAGTTGTTGACTGAAATGGATGGATTT 702664 >seq14 Length=17716633 Score = 107 bits (118), Expect = 2e-18 Identities = 280/424 (66%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||||| || | || || || || Sbjct 9971832 GAGGTAGTGGAGTTTCTTAAGAAGCCTGAGAGATTCACTGCAGTAGGGGCTCGCATTCCA 9971891 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||||| ||||| | || |||||||| || || || || || ||| || || Sbjct 9971892 AAAGGCGTTCTTCTTGTTGGGCCTCCAGGTACTGGGAAAACTCTTCTGGCCAAGGCAATT 9971951 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | | | ||||| ||||||| Sbjct 9971952 GCTGGTGAAGCGGGTGTTCCATTTTTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGT 9972009 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||| ||||| || ||| || || || |||||||| | | ||| || ||| | Sbjct 9972010 TTGTCGGTGTTGGAGCCTCTAGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGCTC 9972069 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG-----CAGCGCT-G 175522 | || ||||| || | ||||| |||||||| ||||| | |||| | ||| | | Sbjct 9972070 CTTGCATTGTATTTGTGGATGAAATTGATGCTGTGGGAAGGCAAAGAGGAACAGGAATCG 9972129 Query 175523 GTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGG 175582 |||| || ||| || || ||||| || ||| | || || || || || || |||| Sbjct 9972130 GTGG------AGGAAACGATGAAAGAGAGCAGACACTAAACCAGCTTCTGACAGAAATGG 9972183 Query 175583 ATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCC 175642 |||| ||||| | | |||||| | | ||||||||||| ||||| | | ||| || | Sbjct 9972184 ATGGTTTTGAGGGTAATACTGGCGTCATTGTTATTGCGGCAACTAACAGGGCGGACATTC 9972243 Query 175643 TTGA 175646 | || Sbjct 9972244 TCGA 9972247 >seq5 Length=25802683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 |||||| || |||||||| | | || |||| | || || || || || || || Sbjct 24866221 GCCAGGGACTGGAAAGACATTGTTGGCTAGAGCTGTGGCAGGAGAGGCAGGGGTGCCGTT 24866280 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | | ||| | ||| | | ||||| |||||||||||||| || || || || || Sbjct 24866281 CTTTTCATGCGCAGCCTCGGAGTTTGTTGAGATGTTTGTTGGAGTTGGAGCGTCGAGAGT 24866340 Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | ||| | ||| || || || ||||| || |||||||||| Sbjct 24866341 GAGAGATTTGTTTGAGAAAGCCAAGTCGAAAGCACCC-TGCATTGTGTTTATTGATGAGA 24866399 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | ||| | | ||||| | | | | | |||||||||||||| Sbjct 24866400 TTGATGCAGTTGGGAGGCAGAGAGGGGCTGGACTTGGAGGTGGG--AATGACGAGAGAGA 24866457 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| | | ||||| |||||||| ||| Sbjct 24866458 GCAGACTATTAATCAGTTGTTGACCGAAATGGATGGATTT 24866497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 ||||||| ||| | || ||||||||| |||| |||||||| |||| | || || | Sbjct 6278962 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACCCTTGA-AAGATCCTACCTCCTGAA 6278904 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||| | ||| |||| || | || || Sbjct 6278903 GGTCCAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGCTGATGAGGGTTGCTGTTGGAAT 6278844 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| || || |||||||| | | | || ||| | |||||| || | ||| Sbjct 6278843 TCACAAAGATGATATTGATTCAGCTATCAAAACGTACCATTTGATGTCTCAGCGGTGGTT 6278784 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| ||||||||||| ||||||||||| || Sbjct 6278783 CACTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCTCA 6278736 >seq7 Length=15101417 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 ||||||| ||| | || ||||||||| |||| |||||||| |||| | || || | Sbjct 5426027 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACCCTTGA-AAGATCCTACCTGCTGAA 5425969 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||| | ||| |||| || | || || Sbjct 5425968 GGTCCAAGGGAAGGTTGTGGAAAGGCCCCAGCACATGCTAATGAGGGTTGCTGTTGGAAT 5425909 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| || || |||||||| | | | |||||| | |||||| || | ||| Sbjct 5425908 TCACAAAGATGATATTGATTCGGCACTCAAAACATACCATTTGATGTCTCAGCGATGGTT 5425849 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || || | || ||||| ||||||||||| ||||| ||||| || Sbjct 5425848 CACACATGCTTCTCCCACCCTTTTCAATGCTGGAACACCTAGACCCCA 5425801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550852800320