Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2514 646 1e-180 seq19 118 1e-21 seq13 114 1e-20 seq8 89.7 6e-13 seq1 82.4 9e-11 >seq2514 Length=157033 Score = 646 bits (716), Expect = 1e-180 Identities = 739/990 (75%), Gaps = 2/990 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||||||| | |||||||| ||| | || ||||||||| | Sbjct 1332 CTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTT 1273 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 ||||||||| ||| | ||| | |||||| |||| || || |||| ||||| ||||| | Sbjct 1272 GATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 1214 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || ||||| || || || |||||||| || |||| ||||| | ||||| |||| Sbjct 1213 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1154 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | ||||| |||||||| || |||| |||| || || || | ||||| || || | Sbjct 1153 ATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAA 1094 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || ||||| ||||||| | || ||| Sbjct 1093 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | |||||||| |||||||||||||| || || Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| |||||| || ||||| || || || || || | || Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | ||||| |||||||||| ||||| || |||| ||||| || |||| Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 |||| || || || |||| ||| | || ||||| ||||||||||| || || ||||| | Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | |||||| || ||| | | | || || || || |||| ||||| || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| || || ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| || |||||||| || || || || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||||||| || | || | ||| ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 | || || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 ||||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| | Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCTG 166756 | || || ||||| || ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 551 bits (610), Expect = 6e-152 Identities = 737/1021 (72%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| |||| | || |||||| | || || || || || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGGTGCGAACTTT 167190 || || |||||||| |||||| | || ||||| || | || ||| ||||| Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGC---CAGTTCCTATTTGGAAGGTTGCAACTTC 32996 Query 167191 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGG 167250 | || || |||||| |||||| || || | | | ||||||||| | | |||||| Sbjct 32997 TTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGG 33056 Query 167251 GGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTT 167310 ||||||||| | ||||| ||||| | ||| ||| | || || | ||| ||||| Sbjct 33057 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTT 33116 Query 167311 GTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 167370 || || ||||||||||| || | || || ||||| ||| | || || |||||||||||| Sbjct 33117 GTTGCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 33176 Query 167371 CGCCTGATTGGTATC-CGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTT 167429 || | || || || || || ||||| || || ||||||||||| ||||| || || Sbjct 33177 CGA-TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 167430 CGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTT 167489 ||| || ||||| | ||||| || ||||| | ||||||||||| || || Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 167490 CGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACT 167549 || || || || || || |||||| ||||||| |||||||||| || || |||||||| Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 167550 GAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAAT 167609 ||| ||||||||||||||||| || || ||| | |||| | ||| |||| | || || Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 167610 CCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAA 167669 ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 167670 GGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTG 167729 || || | | ||||| | ||||| |||||||| ||||| || || ||||| || || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 167730 GTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATT 167789 ||| || || || || ||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 167790 CGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCT 167849 || || || | || | |||| | |||| | ||||||||||||| || || Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 167850 TCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAAC 167909 ||||| || || ||||||||||| || ||| | || ||||| ||||| || ||||| || Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 167910 TTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGA 167969 ||||||||| ||||| || ||| | |||||||| |||| || ||| | || || || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 167970 TCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATA 168029 ||| |||||||| ||| || | ||||| ||||| ||||| || || || ||||| || || Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTA 33835 Query 168030 A 168030 | Sbjct 33836 A 33836 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 110749 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 110690 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 110689 GGTTCGAATCCTACTTGGGGAG 110668 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 131414 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 131473 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 131474 GGTTCGAATCCTACTTGGGGAG 131495 >seq19 Length=16008726 Score = 118 bits (130), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 167510 GATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGG 167569 ||||| ||||||| |||||||||| || || ||||||||||| |||||||||||| || Sbjct 8026081 GATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATTTCATATGACGG 8026022 Query 167570 GTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGA 167629 | || || ||| | |||| | ||| || | | ||| || ||||||| ||| ||||| | Sbjct 8026021 GAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAA 8025962 Query 167630 ATACTTTGTATGAAGATGGTGA 167651 ||||||| | |||||||| ||| Sbjct 8025961 ATACTTTAT-TGAAGATGATGA 8025941 >seq13 Length=15658869 Score = 114 bits (126), Expect = 1e-20 Identities = 246/368 (67%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 ||| ||| ||||| || |||| |||| || ||||| | || || || |||| ||| Sbjct 4833136 GGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATG 4833195 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 | || ||| |||||||||| | || || || | || || || ||| | ||||| | Sbjct 4833196 ATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACA 4833255 Query 166330 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 166389 || ||| || | || | | || |||||| || |||||| || ||| | | Sbjct 4833256 GGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTG 4833315 Query 166390 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 166449 | | || || | ||| |||||| || | ||||||| || || ||| | ||| Sbjct 4833316 ATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAA 4833375 Query 166450 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCT 166509 ||||| || ||||||||| |||||||||| || || | ||||||| |||| ||| Sbjct 4833376 GAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCT 4833435 Query 166510 TCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATC 166569 || |||| ||| | || || || |||||| | | | | |||||| | | || ||| Sbjct 4833436 AGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATC 4833495 Query 166570 TGGTTCAC 166577 |||||||| Sbjct 4833496 TGGTTCAC 4833503 >seq8 Length=18835763 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 13450420 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 13450361 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 13450360 GGTTCGAATCCTACTTGGGGAG 13450339 >seq1 Length=48367220 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||||||||||||||||| ||||| ||| ||||||| || ||||||||||||| || Sbjct 6402558 TTCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGCAT 6402499 Query 18188 CCTACCTGGGGAG 18200 ||||| ||| ||| Sbjct 6402498 CCTACTTGGAGAG 6402486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561230362781600