Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2514 522 8e-144 >seq2514 Length=157033 Score = 522 bits (578), Expect = 8e-144 Identities = 695/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | |||||||||||| | |||||||| || || | |||||||| | | | ||| | Sbjct 1310 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGAC 1252 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || ||||||||||| || ||| || || || || ||||| ||||| || Sbjct 1251 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTAT 1192 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| || |||| || || | ||||| ||||| ||||| || || ||| | | Sbjct 1191 TCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTAT 1132 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | ||||| |||||||| |||||||| || | |||| Sbjct 1131 TCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGA 1072 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| | |||||||||||||| | | || | || | |||||| | |||| || Sbjct 1071 TGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 1012 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||||||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 1011 AGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 952 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || || || |||||||| ||| | ||||||| | Sbjct 951 TGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAAT 892 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 || || || |||||| |||| ||||| | || || || || || || |||| || Sbjct 891 CGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTAT 832 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||||||||||||||| || |||||||| || ||||||||| | || || || Sbjct 831 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 772 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||| || || | ||| ||||||||| ||| |||| || || | Sbjct 771 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 712 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 || | || || || ||| | | || || | ||||||| |||||||||||||| Sbjct 711 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGA 652 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 ||| ||||| ||||| || || ||||| || |||||||| || | |||||||||||||| Sbjct 651 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 592 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 ||| ||||| || || ||| | | |||||||| | ||||| |||||||| |||||||| Sbjct 591 TAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 532 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 ||||| |||| | || | || ||||||||||| | ||||||||||| || || Sbjct 531 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAA 472 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 ||||||| | | | | | | || | || || || ||||||||||| ||| ||||||| Sbjct 471 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCG 412 Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 ||| |||||||| | || || |||||||| || || || || || ||||| || ||||| Sbjct 411 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 352 Query 42214 TGC 42216 || Sbjct 351 AGC 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210034951856