Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2514 576 4e-160 seq13 127 6e-25 seq18 105 2e-18 >seq2514 Length=157033 Score = 576 bits (638), Expect = 4e-160 Identities = 733/1006 (73%), Gaps = 2/1006 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | |||||||||||| |||| |||||| Sbjct 1340 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTT 1281 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | | || || | ||| |||||| |||||||||| Sbjct 1280 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 1222 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 1221 TGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1162 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| ||||||||| | | |||| | || || || | || || Sbjct 1161 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTT 1102 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||| ||||| |||||| | Sbjct 1101 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 1042 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 1041 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACT 982 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 981 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGC 922 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | | |||||| | || ||||| |||||| ||||| ||||| Sbjct 921 GGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCC 862 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| || ||||| ||| | || ||||||||||| || ||||| || Sbjct 861 TCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCT 802 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | || || || || ||||| || || || | ||| || Sbjct 801 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 742 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 741 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 682 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| || |||||||| || || || || ||||| Sbjct 681 TAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGG 622 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| || | |||||||||||||| ||||| || ||| ||||| || || Sbjct 621 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTT 562 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || ||||||||| || | || | || ||||| Sbjct 561 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTAT 502 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || || | |||||||| || || |||||||| | ||||||| ||| || ||| Sbjct 501 GGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT 442 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || ||||| |||||||| | || || ||||| || Sbjct 441 AATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 382 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || ||||| ||||| ||||| || || || || | || || ||| Sbjct 381 ACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 336 >seq13 Length=15658869 Score = 127 bits (140), Expect = 6e-25 Identities = 259/382 (68%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 |||||||||||| ||||||| || || | ||||| || ||||| ||| | || ||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 ||||| ||| |||| ||||| | || || || ||| | || || | || ||| Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 42861 TGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAAC 42920 || || || | | | |||||||||| | | || |||||| | | | ||||| Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 42921 GACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAA 42980 | |||| ||| | ||| | || |||| || |||||| |||| || |||||| | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 42981 CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAA 43040 ||| || | || ||||||| ||||| | | |||||| ||||||| | |||| ||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGC-TAGTTT--TAA 4833443 Query 43041 TAG---TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCAC 43097 || || ||||| || ||||| | | ||||||| | | || || |||||||| Sbjct 4833444 CAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCAC 4833503 Query 43098 TTCTCTTGGCGTCAGTACTATG 43119 | || |||| | || |||||| Sbjct 4833504 TACTTTTGGTATTAGCACTATG 4833525 >seq18 Length=14966190 Score = 105 bits (116), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387 |||| ||||||||||| |||||||||| | | | | || || | ||| |||||| Sbjct 5914787 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATT 5914845 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 |||||||||||| | ||||||| ||||||||||||| |||||||||||| | ||||| Sbjct 5914846 ATCGCTTTCATTGATACCCCTCCAATAGACATTGATGGTATTCGTGAACCTTTTTCTGG- 5914904 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 | | ||||| ||||| ||||| | ||||||| Sbjct 5914905 -ATTAAATTTATGGAAACAATATCATTTATGGTGCC 5914939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528515007672