Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2514 491 1e-134 seq13 102 2e-17 >seq2514 Length=157033 Score = 491 bits (544), Expect = 1e-134 Identities = 703/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 349 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 408 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 409 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 468 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||| || || ||||| |||| ||||| | || || | | Sbjct 469 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 528 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| ||| |||||| Sbjct 529 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAA 588 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 589 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 648 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 649 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 708 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| ||| || | || ||||| || Sbjct 709 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 768 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 769 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 828 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||||||||||||||||||||| || |||||||| ||||| |||||| ||||| Sbjct 829 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 888 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| ||||||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 889 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 948 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | ||| || Sbjct 949 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAA 1008 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||| ||||||| ||| Sbjct 1009 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 1068 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || |||||||| || | || || || ||| | Sbjct 1069 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 1127 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 1128 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 1187 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| || ||||| || || || || ||||| || | ||||| ||| | || Sbjct 1188 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 1246 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | ||| || ||||| | || || |||||||| | ||| |||||||| | Sbjct 1247 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTT 1306 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 1307 CAGTGCTGGTTATCCAATTACAGAA 1331 >seq13 Length=15658869 Score = 102 bits (112), Expect = 2e-17 Identities = 317/487 (65%), Gaps = 4/487 (1%) Strand=Plus/Minus Query 26002 AAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATAT 26061 ||||| ||| |||||| || | | ||| |||| ||||| | || || | ||| || Sbjct 4833550 AAAGTAGAAA--ATTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGAT 4833493 Query 26062 GCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGC 26121 || | | ||||||| | | | |||||||| | |||| | | | |||||||| || Sbjct 4833492 ACCTATTATAGGCCAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGC 4833433 Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181 ||| | || || || ||||| | || || ||| | || || | ||| || ||||| Sbjct 4833432 ATATTAGAAGATCGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTC 4833373 Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAAT-AA 26240 | ||| ||||| | || || | ||| || | | | | | ||||| || || Sbjct 4833372 CTTTTGACCAAATCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCAA 4833313 Query 26241 GTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAG 26300 | || | || |||||| || |||||| || | | | | || | | | || | Sbjct 4833312 ATTAG-AGGTTACCAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTG 4833254 Query 26301 CAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACA 26360 || || ||| || ||||||| || || || | ||| || |||| |||||| | || Sbjct 4833253 TTACGCCTAACATGTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCA 4833194 Query 26361 TAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGA 26420 ||||||||||||||||| | || || ||||||| ||||| |||||| ||| || | Sbjct 4833193 TAAAGTTAAAAGTACCAAATATTCCTAGAGGCACCCCATCTGAAAAACTTTCTTAACCTA 4833134 Query 26421 AAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATA 26480 | |||| || || || | | || || | || |||| ||||||||||| | Sbjct 4833133 TTAGGTAAATCAAAAAAACAACAATAGTTGTCACAATAGGAGCTGAATATGCAACAACAA 4833074 Query 26481 TCCATGG 26487 |||| || Sbjct 4833073 TCCAAGG 4833067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147707590242880