Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2514 585 3e-162 seq13 120 4e-22 seq18 87.8 2e-12 >seq2514 Length=157033 Score = 585 bits (648), Expect = 3e-162 Identities = 712/969 (73%), Gaps = 6/969 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | ||| | || ||||| |||||| | ||||| ||| | | | | Sbjct 1309 CTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCG 1250 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 1249 CAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTC 1190 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | ||||| ||||| ||||| |||||||| || | | Sbjct 1189 GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTC 1130 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || || | ||||| || || || |||||||| ||| | |||||| Sbjct 1129 CTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATG 1070 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| ||||| || ||||||| | || | || | |||||| | | || | Sbjct 1069 AATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 1010 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| || ||| ||||||||||| || |||||| || |||||||||||||| Sbjct 1009 CTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTG 950 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || || || | || || ||||| ||| | ||||||| ||| Sbjct 949 CTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCG 890 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| ||| || |||| ||||||||| || ||||||||||||||||||| |||| Sbjct 889 GTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGA 830 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| | Sbjct 829 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTG 770 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| | | Sbjct 769 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGA 710 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || ||| || | ||||||| || || ||||| |||| Sbjct 709 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAG 650 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 649 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 590 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 || |||||||| | | | || |||||| | ||||| |||||||| || | |||| Sbjct 589 GTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCT 530 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || ||||| ||||| || || |||||||| ||||||| Sbjct 529 GGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACC 470 Query 155831 AGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACC 155887 | |||||||| || |||| ||| || || ||| ||||| || ||| |||||| Sbjct 469 AATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACC 413 Query 155888 GCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACC 155947 | ||| |||||||||||||| ||||| || ||||| ||||| || |||||||| |||| Sbjct 412 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACC 353 Query 155948 TTGCTGCTG 155956 | ||||||| Sbjct 352 TAGCTGCTG 344 >seq13 Length=15658869 Score = 120 bits (132), Expect = 4e-22 Identities = 231/339 (68%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCA 155480 ||| || |||| | ||||||| || || | |||||||||||||| |||| | || ||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 155481 AGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGG 155540 ||| || || | |||||||| |||| || |||||| | || ||| ||||| | | | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 155541 TGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAAC 155600 || || | | | || |||||| |||| ||||| || ||| | ||| ||||| Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 155601 TACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAA 155660 | | | || || || | ||||||| || || ||| | |||||||||||| | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 155661 CATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAA 155720 ||| || | ||||||||| | || || | | |||||| | ||||| || |||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 155721 CTCAAGAAGTCTT--CACTTCTTCCTTGCTGCATGGCCT 155757 ||| | |||| || |||||| | | | | |||||| Sbjct 4833447 CTC--TCATTCTTTACATTTCTTCTTAGGTTCTTGGCCT 4833483 >seq18 Length=14966190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||| ||||||| | | ||||| ||||||||||||||||||||||||| | Sbjct 5914840 TTTATTATCGCTTTCATTGATACCCCTCCAATAGACATTGATGGTATTCGTGAACCTTTT 5914899 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTT 155176 |||| || ||| ||||| ||||| ||||| | |||||| || | |||| || Sbjct 5914900 TCTGG--ATTAAATTTATGGAAACAATATCATTTATGGTGCCATTATTCCTACTT 5914952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584816821553840