Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2514 565 3e-156 seq13 127 2e-24 >seq2514 Length=157033 Score = 565 bits (626), Expect = 3e-156 Identities = 707/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| |||| Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | ||||| || || ||||| ||| ||| || || |||| |||| Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAA 460 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||||| || || ||||| |||||||| | ||| | | Sbjct 461 CTACAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAG 520 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| | |||||| || | | | |||| Sbjct 521 CAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGT 580 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||| ||| ||||| ||||||||||| || || || || |||||||| || || || | Sbjct 581 TGTTAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 640 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | ||||| ||||| ||||| || || ||||||| | || || || | || || | Sbjct 641 TATAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGG 700 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | ||| || || | |||||| ||||||||||| || || || || | Sbjct 701 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGC 760 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || | Sbjct 761 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 820 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | ||| |||||||||||||||| || || |||||||| | || || ||| Sbjct 821 GGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAAC 880 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||||| ||||| | |||||| ||||| || || | || ||||| || | Sbjct 881 TTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAAT 940 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 |||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| || Sbjct 941 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCA 1000 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTAT 68073 ||| | | || | | |||||| | || | || | |||| || || || | Sbjct 1001 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGT 1060 Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGT 68133 | ||||| ||||| | | ||| |||||||| || || || ||||| | || || || Sbjct 1061 ATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCG 1120 Query 68134 TTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAA 68193 ||| |||||| || |||||||||||||| ||||| || || | || || || | || Sbjct 1121 CAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAA 1180 Query 68194 CAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGC 68253 ||||||| | |||||||| || || |||||||| || |||||||| || || || || Sbjct 1181 CAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATA 1240 Query 68254 AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGC 68313 || | ||| | | || |||||||||||| ||||| ||||| |||| ||| | | Sbjct 1241 CAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGAC 1300 Query 68314 GATTGTCA 68321 | || ||| Sbjct 1301 GGTTTTCA 1308 >seq13 Length=15658869 Score = 127 bits (140), Expect = 2e-24 Identities = 325/489 (66%), Gaps = 8/489 (2%) Strand=Plus/Minus Query 67488 AAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATG 67547 |||| |||| || || |||| | |||||| | ||| | | |||||||||||| Sbjct 4833549 AAGTAGAAAA--TTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATA 4833492 Query 67548 CAGACCACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATG 67605 | | | ||| | | | | | |||||| || |||| | ||| |||| ||| | Sbjct 4833491 CCTATTATAGGCCAAGAACCTAAGAAGAAATGTAAAGAATGA--GAGCTGTTAAAACTAG 4833434 Query 67606 CATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTT 67665 |||| | ||||||| | || || | ||||||||| | || |||| ||||| |||| Sbjct 4833433 CATATTAGAAGATCGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTT 4833374 Query 67666 CTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAA 67725 | | ||| || || ||||||| | || || || | | | ||||| |||| | Sbjct 4833373 CCTTTTGACCAAATCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCA 4833314 Query 67726 GAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTG 67785 | ||| || || | | |||| |||||| || | | | || || | ||| ||||| Sbjct 4833313 AATTAGAGGTTACCAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTG 4833254 Query 67786 CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACA 67845 ||| || | ||| || ||||||| |||||||||| ||||| |||| ||| || | || Sbjct 4833253 TTACGCCTAACATGTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCA 4833194 Query 67846 TGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGA 67905 | |||||||||||||| | || || ||||||| | || || ||| ||| ||| | Sbjct 4833193 TAAAGTTAAAAGTACCAAATATTCCTAGAGGCACCCCATCTGAAAAACTTTCTTAACCTA 4833134 Query 67906 AAGGATAGACCAAGAACACAGCGAATGCTG-CAGACACTGGAGCAGAGTATGCTACACAG 67964 | || | ||| || ||| | | | || || | | ||||| || ||||| ||| Sbjct 4833133 TTAGGTAAATCAAAAAAACAACAATAGTTGTCACA-ATAGGAGCTGAATATGCAACAACA 4833075 Query 67965 ATCCAAGGA 67973 ||||||||| Sbjct 4833074 ATCCAAGGA 4833066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566929383684240