Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2514 663 0.0 seq13 158 1e-33 seq18 96.9 4e-15 seq8 87.8 2e-12 seq1 82.4 9e-11 >seq2514 Length=157033 Score = 663 bits (734), Expect = 0.0 Identities = 730/969 (75%), Gaps = 2/969 (0%) Strand=Plus/Plus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 ||||||| ||||| |||||||| || || || ||||| |||||||||||||||||||| | Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 ||| ||||| | || || ||||||||| | || ||| |||||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAG 68017 ||| |||||||| ||||||||||| || ||||| ||||| ||||||| ||| | |||| Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 68018 TGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGT 68077 ||||||||||||| || |||||||| ||||| | |||||| || | ||||| ||||||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 583 Query 68078 TGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGT 68137 | || ||||| |||||||||| || || || || ||||| || || || || || | Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 68138 AAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTT 68197 |||| ||||| |||||||| || ||||||| | || || ||| |||| ||||||| Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 68198 CACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAA 68257 | | | || ||| || |||| ||||||||||| |||||||| || || || || | Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763 Query 68258 ATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGA 68317 |||| ||||| ||||| | ||| || || |||||||| |||||||||||||| || |||| Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823 Query 68318 ACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAAC 68377 | || | ||| |||| ||||||||||| || || |||||||| | || || || | Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883 Query 68378 CTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATG 68437 ||||||||| ||||| | || ||| || || | || || |||||||| || || |||| Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 943 Query 68438 CAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGT 68497 ||||| ||||||||||||||||| ||||| | ||||||||| ||||| ||||||| Sbjct 944 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGT 1003 Query 68498 ATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACA 68557 | | | ||||| | |||||| | | | || | ||||||| || ||||| | Sbjct 1004 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 1063 Query 68558 ACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTG 68617 |||| ||||||| || ||| |||||||| || || |||||||| | || || || | Sbjct 1064 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 1123 Query 68618 AACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAG 68677 || |||||| || |||||||||||||| ||||| ||||| || || || |||| ||||| Sbjct 1124 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1183 Query 68678 GTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAG 68736 |||||||||||||||| ||||| || || || ||||| ||||| |||| || || |||| Sbjct 1184 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 1243 Query 68737 ATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGG 68796 | ||||| | | | ||||| ||||||| || || ||||| |||| ||||| ||| Sbjct 1244 A-AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGG 1302 Query 68797 TTCTCTGTG 68805 || || ||| Sbjct 1303 TTTTCAGTG 1311 Score = 562 bits (622), Expect = 3e-155 Identities = 731/1010 (72%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 33837 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33778 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||||| || ||||| || || || |||| Sbjct 33777 GATCTTGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTATAGA 33718 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || || || || |||||||| |||| Sbjct 33717 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCAC 33658 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| ||||||| | || | | ||| |||| | ||| | || || | Sbjct 33657 GTAGGTTCAGAGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 33598 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| ||||| || || | Sbjct 33597 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGG 33538 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || ||||| || ||||||||||| ||||||| | || || | Sbjct 33537 ACCAAAAGCGGTTGGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 33478 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 33477 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33418 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 33417 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 33358 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||| ||||| |||||||| | ||||| | ||||||||| || |||| || | Sbjct 33357 TCAGTGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACGC 33298 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || ||||| || || || || || || ||| || Sbjct 33297 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 33238 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATG 67241 ||||||| || || ||||||||||| || || ||||| || || || | || ||| Sbjct 33237 CAAAAACCGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGTAATTGCACGGAT- 33179 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 || || |||||||| || || | ||| ||||| ||||| ||||||| |||||||| Sbjct 33178 ---CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCTCCGTGGAGA 33122 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || |||||| |||| | || || | ||| ||| || ||||| || || | ||| Sbjct 33121 GCAACAAAAGTCCACAAGCCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCA 33062 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 |||||||| |||| | | |||||| | | | || |||||| || || || || || Sbjct 33061 GGACCCCATAGTAATAATAAAGAATGGGCTAAACTATTAGCAGGAGTAGAAACTGCGGCG 33002 Query 67422 GTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 || | || || ||| || | ||| | || | ||| || || ||||| || Sbjct 33001 GTTAAGAAGTTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAGGTT 32942 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 32941 ACAAAGGTTGTACCTGTGAACCAACCCCCTAAGGCAAAATAGGCACAAGGAAAGAGCAAT 32882 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || |||||||||||||| || || || || | | ||||||||| Sbjct 32881 AGACCGGACCAACCCACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 32832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 110660 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 110717 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 110718 TCTACCACTGAGCTACTGAGGA 110739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 131503 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 131446 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 131445 TCTACCACTGAGCTACTGAGGA 131424 >seq13 Length=15658869 Score = 158 bits (174), Expect = 1e-33 Identities = 270/391 (69%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 |||| |||| ||| || |||| | ||| ||||||| ||||| | ||||||||||||| Sbjct 4833549 AAGTAGAAA--ATTTAGATTGAGAGGCATAGTGCTAATACCAAAAGTAGTGAACCAGATA 4833492 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 || | | |||||| | | | | |||||| || | ||| | ||| |||| || ||| Sbjct 4833491 CCTATTATAGGCCAAGAACCTAAGAAGAAATGTAAAGAATGAGAGCTGTTAAAACTAGCA 4833432 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || | ||||||| | | || || | ||||| ||| | || |||| ||||| ||||| Sbjct 4833431 TATTAGAAGATCGGTCAGCCAAAAGAACCATGAGCAACTACGATGTCATAAGTTTCTTCC 4833372 Query 68149 TCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGT 68208 | |||||| || ||||||| | || ||| ||| ||| ||||||| | || Sbjct 4833371 TTTTGACCAAATCTGTAACCTTCATTAGTGGATTCATTTTATTTGGTTTCCTTGATCAAA 4833312 Query 68209 GAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCA 68268 ||| || |||| |||||||||| || || | | || || ||| || | Sbjct 4833311 TTAGAGGTTACCAAAAAACCATGCATAACATTGGATAAGGAGTCATTGCATAAACCTGTT 4833252 Query 68269 ACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATG 68328 ||||| | ||| || || |||| || ||||||| ||||| |||| ||| || | ||| Sbjct 4833251 ACGCCTAACATGTGAAATGGGTCTATAAGGATGTAATGCTCAGCTTAGAATACAATCATA 4833192 Query 68329 TAGTTGAAAGTACCAGAAATGCCGAGAGGCA 68359 |||| ||||||||| | || || ||||||| Sbjct 4833191 AAGTTAAAAGTACCAAATATTCCTAGAGGCA 4833161 >seq18 Length=14966190 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/173 (74%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 68618 AACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAA-CCAGCAACA 68676 || |||||| || |||||| ||||||| ||||| ||||| || | || |||| || | Sbjct 5914952 AAGTAGGAATAATGGCACCATAAATGATATTGTTTCCATA---AATTTAATCCAGAAAAA 5914896 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 ||||||||||||||||| ||||| | || || | | | ||||| |||| || || ||| Sbjct 5914895 GGTTCACGAATACCATCAATGTCTATTGGAGGGGTATCAATGAAAGCGATAATAAATACA 5914836 Query 68736 GATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGT 68788 || ||||| | | | ||||| ||||||| || || ||||| |||| || Sbjct 5914835 GA-AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGT 5914784 >seq8 Length=18835763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 13450331 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 13450388 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 13450389 TCTACCACTGAGCTACTGAGGA 13450410 >seq1 Length=48367220 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||| ||| ||||||| ||||||||||||| || ||||||| ||| || Sbjct 6402478 AATCAAAT--CTCTCCAAGTAGGATGCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 6402535 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| |||||||||||||||||| Sbjct 6402536 TCTACCGCTGAGCTACTGAGGA 6402557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572036423190480