Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 seq17 104 4e-17 seq15 104 4e-17 seq7 104 4e-17 seq1 98.7 2e-15 seq11 87.8 3e-12 >seq6 Length=26894541 Score = 158 bits (174), Expect = 2e-33 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||| || | | || ||| ||| ||||||||||| || |||||||||| ||| Sbjct 10380603 ATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTC 10380544 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || |||||||| ||||| || |||| |||| || ||||||| Sbjct 10380543 TGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGTA 10380484 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||| ||| ||||| |||||||| ||||| || ||||| ||||| || || |||||| Sbjct 10380483 TCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGC 10380424 Query 193359 AT 193360 || Sbjct 10380423 AT 10380422 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || ||||| | | || ||||||||||| || |||||||| Sbjct 10380348 TCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTG 10380289 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| |||||| ||| | || || ||||| ||| ||| ||||| |||||||| Sbjct 10380288 TCTTGGATTTTGACTTTGACGTTGTCGATTGTATCAGAATTCTCGACTTCAAGAGTTATG 10380229 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || || || ||||| Sbjct 10380228 GTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 10380194 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| || ||||||||||||| |||| ||| || ||| ||||| || Sbjct 10380879 ATCCCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCT 10380820 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || || || || || ||||| || | ||||| ||||| || Sbjct 10380819 GCAAGAGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGG 10380760 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | || ||| ||||| || ||| Sbjct 10380759 GGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCA 10380700 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || |||| || || || || |||||||| Sbjct 10380699 ACCTCAAGCGTGATTGTATTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq17 Length=14661173 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||| ||||| |||| || || |||||||||||| Sbjct 1747438 ATCCCACCGCGCAGACGGAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCA 1747379 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | |||||||| |||||||| || || || || || || Sbjct 1747378 GCAAGGGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGT 1747319 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || || || | ||| ||| || || ||| |||| Sbjct 1747318 GGGATCCCTTCCTTGTCCTGGATCTTTGTCTTCACATTGTCAATTGTGTCAGAACTCTCA 1747259 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 1747258 ACCTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 1747209 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || ||||||| |||| || | || || ||||||||||| Sbjct 1747666 ATCCCACCACGCAGACGGAGTACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGTCT 1747607 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | |||||| || ||||| || | ||||| ||||| || Sbjct 1747606 GCAAGGGTGCGACCATCTTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGT 1747547 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || || || | ||| ||| ||||| || || Sbjct 1747546 GGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCTGAGCTTTCC 1747487 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || ||||| | || || ||||| || ||||| Sbjct 1747486 ACCTCCAAAGTAATTGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 1747437 >seq15 Length=15134944 Score = 104 bits (114), Expect = 4e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | |||||| ||||||||||| || ||||| || || || ||| Sbjct 555880 TGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGATT 555939 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||||||||| ||| || || || ||||| || || || || Sbjct 555940 TTGGCTTTGACATTGTCAATAGTATCACTAGATTCGACCTCAAGAGTGATGGTCTTGCCA 555999 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| || |||||| Sbjct 556000 GTCAGGGTTTTCACAAAGATCTGCATT 556026 >seq7 Length=15101417 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || |||| || | || | || || || ||||| || Sbjct 1458891 ATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCA 1458950 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||||| || ||||| || || ||||| ||||| || Sbjct 1458951 GCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGG 1459010 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| ||| | ||| ||||||||| || || Sbjct 1459011 GGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCC 1459070 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| ||||| |||||||| Sbjct 1459071 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 1459120 >seq1 Length=48367220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| ||||| ||||| |||| || | ||| | || || ||| || ||||| | Sbjct 4826390 CCACCCCTCAAGCGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCA 4826449 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| |||| |||||||||||| ||||| | | || || || || || Sbjct 4826450 AGTGTACGTCCATCTTCTAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGG 4826509 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| ||||||| ||| | ||| || ||||| ||||| || || Sbjct 4826510 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCGACC 4826569 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || | || || || || || ||||| Sbjct 4826570 TCGAGGGTTATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCAT 4826616 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | |||||| ||||| || | ||| | || || ||| || Sbjct 25980092 AATTTGCATACCACCTCTAAGTCGAAGCACCAGGTGGAGTGTGGATTCCTTTTGAATGTT 25980151 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | || || | ||| || | ||| || || ||||| || | |||||||| Sbjct 25980152 ATAGTCAGCTAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTG 25980211 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || ||||| | ||| | || |||||| || || Sbjct 25980212 GTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTCACGTTATCAATAGTGTCAGA 25980271 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | || || || || || || | || || ||||| || ||||| Sbjct 25980272 GCTCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 25980328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||| | ||| || |||| || | || | ||| || || ||||||||| Sbjct 25980327 ATGCCACCTCGAAGTCGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTATAGTCG 25980386 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | ||| || || ||||| || | ||||| || || ||| Sbjct 25980387 GCAAGGGTGCGACCGTCCTCAAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGA 25980446 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| || | ||| ||| || || || ||| Sbjct 25980447 GGGATACCTTCTTTATCTTGGATCTTGGCCTTGACATTGTCAATTGTGTCCGAGCTCTCC 25980506 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || || || || || |||||||| || ||||| Sbjct 25980507 ACTTCCAAGGTAATTGTCTTGCCAGTGAGAGTCTTTACAAAGATCTGCAT 25980556 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || |||| ||| | |||| ||| || ||| || |||||| Sbjct 44860134 ATGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCG 44860075 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || |||||||| | ||||| || || || Sbjct 44860074 GCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGT 44860015 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| |||| ||| |||||| || || || Sbjct 44860014 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCC 44859955 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || |||||||| Sbjct 44859954 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 44859905 >seq11 Length=18885544 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| | || || | ||| || || || ||||||||||| || || || Sbjct 16430649 ATATTGTAGTCTGCTAGGGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTT 16430590 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| ||||| ||||||||||| || || || || || | || | ||| ||| || Sbjct 16430589 TGTTGGTCAGGGGGTATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTG 16430530 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || ||| || || || || || || || || || | || || ||||| |||||| Sbjct 16430529 TCTGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGC 16430470 Query 193359 ATT 193361 ||| Sbjct 16430469 ATT 16430467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899626128360480