Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq17 104 3e-17 seq11 93.3 6e-14 seq4 89.7 8e-13 seq6 86.0 9e-12 >seq1 Length=48367220 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | ||||||||||| ||||| || |||||||| ||| Sbjct 25979872 ATGCAGATTTTTGTCAAGACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGAGCTCT 25979813 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || ||||| || || || || ||||| || Sbjct 25979812 GATACAATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 25979753 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||| || |||||||| || ||| ||||||| ||||||| ||| Sbjct 25979752 CAAAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGAACTTTGGCAGATTACAAT 25979693 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| || || Sbjct 25979692 ATCCAGAAGGAGTCGACTCTGCA 25979670 Score = 113 bits (124), Expect = 7e-20 Identities = 305/464 (66%), Gaps = 7/464 (2%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| || ||||||||| | |||||||||||||||||||| |||| ||| ||||| Sbjct 31902854 AGCCTTTTGATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATAT 31902913 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 || | ||| ||||||||||||||| || || ||| | | | || | Sbjct 31902914 CAACTCCATCCAATCAAATGGATTAGCCACATTGTA--CACCTTCCCGCACCCAAGCGCA 31902971 Query 17980 --TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 || | ||||| |||||||| || | ||| || |||||| || | |||||| || Sbjct 31902972 CCCAACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCC 31903031 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | | | | ||||| | || | | ||| || ||||||| || |||| || || Sbjct 31903032 ACCAACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTC 31903091 Query 18098 ATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAA 18157 | ||| | || | | || || || | | | | ||| | | | Sbjct 31903092 ACTATCCCCTTCACGCGCTCCTCACTCAGCTTCTTCCTCAACAGGCTGTAA---AGGAGA 31903148 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| |||||| || | |||||||||| || || || ||||| || || | Sbjct 31903149 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 31903208 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | |||||||| ||||||||||| ||||| | || || ||| Sbjct 31903209 CCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 31903268 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || || ||||| || || || ||||| || || |||||||| Sbjct 31903269 ATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACT 31903312 Score = 100 bits (110), Expect = 4e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||||||||| || || || || || || || ||| Sbjct 25980328 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCT 25980269 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||||||| |||||| || || || || ||||| || ||||| ||| Sbjct 25980268 GACACTATTGATAACGTGAAAGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 25980209 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| || |||||| | ||| || | || ||||| Sbjct 25980208 CAGAGGCTCATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTAGCTGACTATAAC 25980149 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 25980148 AT-TCAAAAG 25980140 >seq17 Length=14661173 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||||||||| || || || || || || Sbjct 1747665 ATGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 1747724 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || | || || |||||||| ||||| || || || || || Sbjct 1747725 GATACTATTGATAACGTCAAGACAAAGATCCAAGATAAGGAAGGGATCCCACCGGACCAG 1747784 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || || ||||| || ||| | || | |||| || ||| Sbjct 1747785 CAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACAAT 1747844 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| |||| || ||||| ||| Sbjct 1747845 ATTCAGAAAGAATCGACTCTGCATTTGGTG 1747874 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || || || || || || || || Sbjct 4943049 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 4942990 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||||||||| ||||| |||||||| ||| Sbjct 4942989 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 4942930 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| || || ||| | ||| | | ||||| || Sbjct 4942929 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGGCGCACTCTCGCTGATTACAAC 4942870 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || |||||||| ||| Sbjct 4942869 ATCCAGAAGGAGTCCACCCTTCATTTGGTG 4942840 Score = 89.7 bits (98), Expect = 8e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||||| || || | || || || ||| Sbjct 4942594 AATGCAAATCTTTGTCAAGACCCTGACTGGAAAAACCATCACCCTGGAGGTTGAGAGTTC 4942535 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| |||||| || || || || || || || ||||| || Sbjct 4942534 AGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGGATTCCACCAGACCA 4942475 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| |||| | ||| || |||||||| |||||| || || | ||||||| || Sbjct 4942474 GCAGAGACTGATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACCCTGGCAGATTACAA 4942415 Query 156002 TATA 156005 ||| Sbjct 4942414 CATA 4942411 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| |||||| || | |||||||||| || || || ||||| ||| |||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | ||||||| ||||||||||| ||||| | || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || || ||||| || || || | || || || || ||||| Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACT 8256521 >seq11 Length=18885544 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | |||||||| || || || || || || || |||| Sbjct 16429784 ATGCAAATCTTTGTTAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTGGAGAGTTCT 16429843 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || || || || |||||||| || ||||| || Sbjct 16429844 GATACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 16429903 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||||||||||||||| || ||| Sbjct 16429904 CAGAGGTTGATCTTTGCCGGTAAGCAGCTTGAGGAT 16429939 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || ||||||||||| || || || | || || || || Sbjct 16430467 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCCTGGAGGTGGAGAGCTC 16430526 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || ||| || || || || ||||| ||||| || || || Sbjct 16430527 AGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATACCCCCTGACCA 16430586 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| ||||| | |||||| |||||| | |||||| | || || |||| || || Sbjct 16430587 ACAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACCCTAGCAGACTACAA 16430646 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| || ||| | || ||||| Sbjct 16430647 TATCCAGAAGGAGTCCACCCTTCA 16430670 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || ||| Sbjct 16430012 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAGGTTGAGAGCTCT 16430071 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || ||||| || || |||||||| || ||||| || Sbjct 16430072 GATACCATTGATAATGTCAAGGCCAAGATACAGGACAAGGAAGGCATTCCCCCAGACCAG 16430131 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 16430132 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 16430167 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 8e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| |||||| |||| || ||||| || || || ||||| | || || || || | Sbjct 1307310 ATGCAGATATTTGTTAAGACCTTGACAGGGAAGACCATTACCCTTGAGGTGGAGAGCAGC 1307251 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || |||||||| || ||||| || || || || Sbjct 1307250 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCGGATCA 1307192 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | |||||| || |||||||||||| | ||||| | |||||||| Sbjct 1307191 ACAACGTTTGATATTTGCCGGGAAACAGCTCGAAGATGGTCGGACTTTGGCCGATTATAA 1307132 Query 156002 TAT 156004 ||| Sbjct 1307131 TAT 1307129 >seq6 Length=26894541 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| || || | |||||||| ||| Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 10380481 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || || || ||||| |||||||| || ||||| || ||| Sbjct 10380482 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 10380541 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || || || | || ||| || || | | ||||||| Sbjct 10380542 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATA-- 10380599 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 ||||||||| ||| | || ||||| Sbjct 10380600 ATATCCAAAAGGAGTCCACCCTTCA 10380624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731849000922400