Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-21 seq6 111 3e-19 seq17 105 1e-17 seq7 100 5e-16 seq11 96.9 6e-15 >seq1 Length=48367220 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | |||| || | || | |||||| ||| |||||||| Sbjct 25980555 ATGCCACCTCTGAGACGAAGCACTAGGTGGAGGGTGGACTCTTTCTGAATGTTATAATCA 25980614 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | |||||| ||||||||||| || || || || || || Sbjct 25980615 GCAAGAGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTTTGCTGATCTGGG 25980674 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || ||| ||| |||||| || || ||||| ||| Sbjct 25980675 GGGATCCCTTCCTTATCCTGGATCTTAGCTTTGACATTATCAATGGTGTCTGAGCTTTCA 25980734 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| |||||||| | ||||| | || || ||||| Sbjct 25980735 ACCTCAAGAGTGATGGTCTTACCAGTAAGAGTTTTCACAAAGATTTGCAT 25980784 Score = 105 bits (116), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| ||||| | ||| || | || | || | ||| | ||| || ||||| ||| Sbjct 25979640 TAATAACCACCACGAAGGCGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATATTGTAA 25979699 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 |||| |||| |||| | || |||| || || |||||||| || || || || ||||| Sbjct 25979700 TCTGCCAAAGTTCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCT 25979759 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || || ||||| || ||||| || ||||| || ||||| || Sbjct 25979760 GGTGGGATACCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATTGTATCAGAGCTC 25979819 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | ||||||||||| ||||| | ||| || | || |||||||| Sbjct 25979820 TCGACTTCCAAGGTAATGGTTTTTCCAGTGAGTGTCTTGACAAAAATCTGCAT 25979872 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||||||||| | || | || | || | || || ||| ||||| || Sbjct 25980099 ATACCACCTCTAAGTCGAAGCACCAGGTGGAGTGTGGATTCCTTTTGAATGTTATAGTCA 25980158 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || ||| | || |||| ||| || |||||||| || | ||||||||||| || Sbjct 25980159 GCTAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGG 25980218 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || |||||| ||| || ||| ||||| || || || Sbjct 25980219 GGGATGCCCTCCTTGTCCTGGATTTTAGCTTTCACGTTATCAATAGTGTCAGAGCTCTCA 25980278 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || ||||| || || |||| || |||||||| Sbjct 25980279 ACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 25980328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| ||||| | || || || | || | || || ||| || || || Sbjct 25979871 ATACCGCCTCTCAGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 25979930 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | |||||||||||||||||| | || |||||||| ||| Sbjct 25979931 GCAAGGGTCCGTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTTTGTTGGTCTGGT 25979990 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || |||||| || ||||| || || || || || Sbjct 25979991 GGGATTCCTTCCTTATCCTGGATTTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCG 25980050 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || ||||| || || || | || || ||||| Sbjct 25980051 ACCTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTTACAAAAATTTGCAT 25980100 >seq6 Length=26894541 Score = 111 bits (122), Expect = 3e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||||| | || | || | | || || |||||||| ||||||||||||| || Sbjct 10380603 ATATTATAATCCGC-AAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCT 10380545 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| || || || || |||||||| ||||| || || ||||| || ||||| Sbjct 10380544 CTGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGT 10380485 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || ||||| ||||| |||||||| || |||| ||||| | ||| || || Sbjct 10380484 ATCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTG 10380425 Query 172067 CAT 172069 ||| Sbjct 10380424 CAT 10380422 >seq17 Length=14661173 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || || || | ||| || ||||| || |||| Sbjct 1748120 ACCACCACGAAGGCGGAGGACAAGGTGCAATGTGGACTCCTTTTGGATATTGTAGTCTGC 1748061 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| | || ||||| || ||||||||||| || || ||||| ||||| ||||| Sbjct 1748060 CAGGGTACGTCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 1748001 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || || | || || ||| || ||||| || ||| || Sbjct 1748000 GATCCCCTCCTTGTCTTGGATCTTTGTCTTCACGTTATCAATGGTATCGGAGCTTTCCAC 1747941 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || || ||||| || | || |||||||| Sbjct 1747940 CTCGAGAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 1747893 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||| | ||||| |||||| || ||| Sbjct 1747894 ATCCCACCACGCAGACGGAGCACCAAATGCAGAGTCGATTCTTTCTGAATATTGTAGTCT 1747835 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| ||||| ||||||||||| || || || ||||| ||| Sbjct 1747834 GCAAGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGT 1747775 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || | || || ||| |||||||| || || Sbjct 1747774 GGGATCCCTTCCTTATCTTGGATCTTTGTCTTGACGTTATCAATAGTATCCGAGCTCTCC 1747715 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || ||||| ||||| | ||||| | || |||||||| Sbjct 1747714 ACCTCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAAAATCTGCAT 1747665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||||||||| | || || || | || | ||| || || || || || Sbjct 4943276 ATACCACCTCTAAGTCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4943335 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| || |||||||| || || || || || || || Sbjct 4943336 GCGAGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGG 4943395 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||||||||| || || || || ||| Sbjct 4943396 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATTGTGTCAGAGCTTTCC 4943455 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || |||||||| Sbjct 4943456 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATCTGCAT 4943505 >seq7 Length=15101417 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | |||| || || || | ||| | || || || |||||||| Sbjct 1458891 ATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCA 1458950 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | |||| | || || | ||||| |||||||| || || ||||| || || || Sbjct 1458951 GCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGG 1459010 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || ||| |||||| |||||||| || ||| Sbjct 1459011 GGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCC 1459070 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 1459071 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 1459120 >seq11 Length=18885544 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || |||| || | ||| | || ||||| || || || ||||| || || || Sbjct 16430649 ATATTGTAGTCTGCTAGGGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTT 16430590 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||||||||| ||||||||||| || || || || ||| || ||||| || || Sbjct 16430589 TGTTGGTCAGGGGGTATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTG 16430530 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || || || ||||| || ||||| || || |||| || || ||| Sbjct 16430529 TCTGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGC 16430470 Query 172068 ATT 172070 ||| Sbjct 16430469 ATT 16430467 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | || || || | || || | |||||| ||||| || || || | Sbjct 145544 AATATTATAATCAGCTAGAGTCCGACCATCCTCAAGTTGTTTCCCAGCGAAGATCAAACG 145485 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| |||||||| || ||||| ||||| || || || || || Sbjct 145484 TTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTGCCTTAACGTTGTCGATGGT 145425 Query 172007 ATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 || | | | || || || ||||||||||| || || || || || || | |||||||| Sbjct 145424 GTC-GCTGCTCTCGACCTCGAGAGTAATGGTCTTCCCGGTCAAGGTCTTGACGAATATCT 145366 Query 172066 GCAT 172069 |||| Sbjct 145365 GCAT 145362 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| || ||||| ||||| ||||| || || || || || || ||| Sbjct 16430385 TGTTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATT 16430326 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| ||||| || || || || || | |||||||| || ||| Sbjct 16430325 TTGGCCTTCACATTATCGATAGTGTCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCA 16430266 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || | ||| |||||||| Sbjct 16430265 GTTAAAGTCTTCACGAAAATCTGCAT 16430240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905107556101200